Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas syringae pv. syringae B728a

 Score =  187 bits (476), Expect = 4e-52
 Identities = 119/302 (39%), Positives = 170/302 (56%), Gaps = 17/302 (5%)

Query: 19  VPAGMRNERLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQRVELA 78
           VP+ +  +RLD+   +  +  + SR ++   I+DG+ TVDG     P   +  G  +EL 
Sbjct: 11  VPSELGGQRLDQVAAQLFA--EHSRSRLSAWIKDGRLTVDGGALR-PRDIVHGGAVLELI 67

Query: 79  IAPAATAV-EPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHF-DALR 136
               A      ++ +L II+ D+ +LVI+KPAGL VHP     +GTL++ L+HH  D + 
Sbjct: 68  AEQEAQGEWVAQDIELDIIYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIIN 127

Query: 137 AQEGFRPGIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVPPATGEV 196
                R GIVHR+DKDT+GL++VA +   + +L      R+V + Y  +V GV  A G++
Sbjct: 128 VP---RAGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKI 184

Query: 197 DAPIGRHPTHKVRMAVVKGGKPARSEWRVLHAAPEGHYALVAVRIHSGRTHQIRVHMAHA 256
           DAPIGRH   + RMAV++GGK A S +RVL       +  V V++ +GRTHQIRVHMAH 
Sbjct: 185 DAPIGRHGQQRQRMAVMEGGKQAVSHYRVLERFRS--HTHVRVKLETGRTHQIRVHMAHI 242

Query: 257 GFPLWGDQLYG------PGTPARLREQ-GYGARQMLHAWHLAFTHPVTGERLRFTCPPPQ 309
            +PL GD  YG      P     + +      RQ LHA  L   HP TG+R+ +  P P 
Sbjct: 243 NYPLVGDPAYGGRFRIPPAASLTMVDSLKTFPRQALHARFLELDHPTTGKRMSWESPLPD 302

Query: 310 DF 311
           DF
Sbjct: 303 DF 304