Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 324 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  199 bits (505), Expect = 2e-55
 Identities = 123/302 (40%), Positives = 168/302 (55%), Gaps = 14/302 (4%)

Query: 27  RLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQRVEL-AIAPAATA 85
           RLD+ + E     D SR ++K  I  G   VDG V T P  ++   Q +E+ A      A
Sbjct: 19  RLDQAIAELFP--DYSRTRLKEWILGGNVYVDGVVVTKPREKVLESQVIEIEATLEEEVA 76

Query: 86  VEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHFDALRAQEGFRPGI 145
            E +E DL I++ D+H+LVI+K AGL VHP     +GTL++ L+HH   +      R GI
Sbjct: 77  AEAQEIDLDIVYEDDHILVINKQAGLVVHPGAGNADGTLMNALLHHCPEIEHVP--RAGI 134

Query: 146 VHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVPPATGEVDAPIGRHPT 205
           +HR+DKDT+GL++VA +   +  L  A   R + +EY A+V G   A G VDAPIGRHPT
Sbjct: 135 IHRLDKDTTGLMVVAKTVEAQTHLVAALQARDITREYEAIVLGTMTAGGTVDAPIGRHPT 194

Query: 206 HKVRMAVVKGGKPARSEWRVLHAAPEGHYALVAVRIHSGRTHQIRVHMAHAGFPLWGDQL 265
            +  MAV   G+P+ + +RV  A     +  + +R+ +GRTHQIRVHMAH G  L GD +
Sbjct: 195 KRTHMAVHHSGRPSVTHYRV--AEKFRAHTRLRLRLETGRTHQIRVHMAHIGHVLVGDPV 252

Query: 266 YG--PGTPARLREQGYG-----ARQMLHAWHLAFTHPVTGERLRFTCPPPQDFPDLAIAL 318
           YG  P  P     + +       RQ LHA  L   HPVT E + F  P P+D   L  AL
Sbjct: 253 YGGRPKPPKNASPEFFEVLKNFTRQALHAVRLELAHPVTMEIMSFNAPIPEDMVLLTKAL 312

Query: 319 AR 320
            +
Sbjct: 313 RK 314