Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 344 a.a., ribosomal large subunit pseudouridine synthase D from Phaeobacter inhibens DSM 17395

 Score =  187 bits (475), Expect = 5e-52
 Identities = 124/320 (38%), Positives = 173/320 (54%), Gaps = 31/320 (9%)

Query: 26  ERLDRFLGEAL-SHTDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQRVELAIAPAAT 84
           +RLD+ +   +     LSR ++ R I  GQ  V+GTV +    ++  G  +E+ I  A  
Sbjct: 16  KRLDKAVSRDVPEEATLSRTRLARLIEAGQLQVNGTVVSDAKAKVDEGALIEITIEEAED 75

Query: 85  A-VEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHF-DALRAQEGF- 141
           + + PE+  L +I+ D+ L+VI+KP G+ VHP P  P GTLV+ L+HH  D L    G  
Sbjct: 76  SHIGPEDIPLEVIYEDDDLIVINKPTGMVVHPAPGTPSGTLVNALLHHCGDNLSGVGGVK 135

Query: 142 RPGIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVPPATG------- 194
           RPGIVHRIDK+TSGLL+VA S+     L+  F + TVE+ Y A+ +GVP A         
Sbjct: 136 RPGIVHRIDKETSGLLVVAKSDVAHQGLAAQFEKHTVERYYRAICYGVPDANDPRLRGVK 195

Query: 195 ----------EVDAPIGRHPTHKVRMAVV-KGGKPARSEWRVLHA-APEGHYALVAVRIH 242
                     ++   + RH T + R AV+ +GG+ A +  R++ +       AL+   + 
Sbjct: 196 GTSFEPGNILKLTTQLARHKTDRQRQAVLFQGGRHAITRARIVDSFGTPPVVALIECWLE 255

Query: 243 SGRTHQIRVHMAHAGFPLWGDQLYGPG---TPARLREQGYGA-----RQMLHAWHLAFTH 294
           +GRTHQIRVHMAH G  L GD +YG         L E    A     RQ LHA  L F H
Sbjct: 256 TGRTHQIRVHMAHGGHGLVGDPVYGGKRKLAAKSLPEDTAAAIQAFPRQALHAAVLGFIH 315

Query: 295 PVTGERLRFTCPPPQDFPDL 314
           PVTG+ +RF  P P+D   L
Sbjct: 316 PVTGDAMRFEAPLPEDMAHL 335