Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 323 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  194 bits (492), Expect = 5e-54
 Identities = 121/308 (39%), Positives = 166/308 (53%), Gaps = 14/308 (4%)

Query: 19  VPAGMRNERLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQRVEL- 77
           + A    +RLD+ L E     D SR +IK  I+ G   VDG V T P  ++  GQ +E+ 
Sbjct: 11  ITATQTGQRLDQTLAELFP--DYSRTRIKEWIQAGAVYVDGMVQTKPREKVLEGQEIEIE 68

Query: 78  AIAPAATAVEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHFDALRA 137
           A        E +  DL I++ D+H++VI+K AGL VHP     +GTL++ L+HH   +  
Sbjct: 69  ATLKEEIKAEAQAIDLDIVYEDDHIIVINKQAGLVVHPGAGNSDGTLMNALLHHCPEIEL 128

Query: 138 QEGFRPGIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVPPATGEVD 197
               R GIVHR+DKDT+GL++VA +   +  L  A   R + +EY A+V G   A G VD
Sbjct: 129 VP--RAGIVHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVSGTMTAGGVVD 186

Query: 198 APIGRHPTHKVRMAVVKGGKPARSEWRVLHAAPEGHYALVAVRIHSGRTHQIRVHMAHAG 257
            PI RHPT +  MAV   G+P+ + +RV  A     +  + +R+ +GRTHQIRVHMAH G
Sbjct: 187 EPIARHPTKRTHMAVHHSGRPSVTHYRV--AEKFRAHTRLRLRLETGRTHQIRVHMAHIG 244

Query: 258 FPLWGDQLYG-------PGTPARLREQGYGARQMLHAWHLAFTHPVTGERLRFTCPPPQD 310
             L GD +YG         TP  +       RQ LHA  L   HP T E + +  P P+D
Sbjct: 245 HILVGDPVYGGRPRPPKKATPELMEALNGFKRQALHAVRLELAHPFTCEIMSWQAPIPED 304

Query: 311 FPDLAIAL 318
              L  AL
Sbjct: 305 MVALTRAL 312