Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 347 a.a., pseudouridine synthase, RluA family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  181 bits (460), Expect = 3e-50
 Identities = 129/324 (39%), Positives = 164/324 (50%), Gaps = 32/324 (9%)

Query: 27  RLDRFLGEALSH-TDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQRVELAI-APAAT 84
           RLDR L   +     LSR ++ + I  G       V  +P  R+ +G  + L + APA  
Sbjct: 22  RLDRALARDVPEGLGLSRSRLVKLIEAGDVRRGAEVLASPKARVAAGDVLTLRLGAPAEV 81

Query: 85  AVEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHF-DALRAQEGF-R 142
            +  E   L +I  D  L+V++KPAG+ VHP P  P GTLV+ L+HH  D+L    G  R
Sbjct: 82  PLVAEAIPLDVIFEDADLIVVNKPAGMVVHPAPGSPAGTLVNALMHHCGDSLSGIGGEKR 141

Query: 143 PGIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVPPATGE------- 195
           PGIVHRIDKDTSGLL+VA S+     L+  FA  +VE+ Y ALVHGVP A+         
Sbjct: 142 PGIVHRIDKDTSGLLVVAKSDHAHQGLAAQFAAHSVERIYDALVHGVPEASDPRLRGLPM 201

Query: 196 ----------VDAPIGRHPTHKVRMAVVKGGKPARSEWRVLHAAPEGH---YALVAVRIH 242
                     + A + RH T + R AVV  G+   +  R    A  G     A +A  + 
Sbjct: 202 VRFEPGGVLCLRASLARHRTDRQRQAVVAEGQGRHAVTRARVEARFGDPAGVAHLACWLE 261

Query: 243 SGRTHQIRVHMAHAGFPLWGDQLYG--------PGTPARLREQGYGARQMLHAWHLAFTH 294
           +GRTHQIRVH+AH G  L GD +YG          +P  L       RQ LHA  L F H
Sbjct: 262 TGRTHQIRVHLAHIGHGLLGDPVYGGRKRLSAKAFSPQALAAAEAFPRQALHARTLGFVH 321

Query: 295 PVTGERLRFTCPPPQDFPDLAIAL 318
           PVTG  L F  P P D   L  AL
Sbjct: 322 PVTGAALSFAAPMPADMAALWAAL 345