Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 357 a.a., ribosomal large subunit pseudouridine synthase D (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  155 bits (393), Expect = 2e-42
 Identities = 112/316 (35%), Positives = 160/316 (50%), Gaps = 22/316 (6%)

Query: 17  LTVPAGMRNERLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGT-VCTTPSTRLRSGQRV 75
           + V  G    R+D++L E +   + SR +I++A  DG    +G  V ++   +      V
Sbjct: 32  VVVDKGQAMVRVDKYLFERI--VNASRNRIQKAAEDGFVMANGKPVKSSYKVKPLDVITV 89

Query: 76  ELAIAPAATAVEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHFDAL 135
            +        + PE   L I++ D +++V++KPAGL VHP      GTLV+ L  H   +
Sbjct: 90  MMDRPRYENEIIPENIPLNIVYEDPYVMVVNKPAGLVVHPGHGNYHGTLVNALAWHMKDI 149

Query: 136 RAQEGFRP--GIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHG-VPPA 192
              +   P  G+VHRIDKDTSGLL++A +   +  L   F  +T ++ Y ALV G V   
Sbjct: 150 PEYDANDPHVGLVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTTKRRYRALVWGNVEQD 209

Query: 193 TGEVDAPIGRHPTHKVRMAVVKG---GKPARSEWRVLHAAPEGHYALVAVRIHSGRTHQI 249
            G +   I R+P  +++MAV+     GK A + +RVL     G+  LV   + +GRTHQI
Sbjct: 210 EGTIVGSIARNPKDRMQMAVMSDPSMGKHAVTHYRVLERL--GYVTLVECILETGRTHQI 267

Query: 250 RVHMAHAGFPLWGDQLYG-----PGTPARLREQGYG------ARQMLHAWHLAFTHPVTG 298
           RVHM H G  L+ D+ YG      GT     +Q          RQ LHA  L F HPVTG
Sbjct: 268 RVHMKHIGHVLFNDERYGGHEILKGTHFSKYKQFVNNCFDTCPRQALHAMTLGFVHPVTG 327

Query: 299 ERLRFTCPPPQDFPDL 314
           E + FT   P D   L
Sbjct: 328 EEMYFTSELPDDMTRL 343