Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 431 a.a., ribosomal large subunit pseudouridine synthase D from Burkholderia phytofirmans PsJN

 Score =  186 bits (471), Expect = 2e-51
 Identities = 121/316 (38%), Positives = 169/316 (53%), Gaps = 14/316 (4%)

Query: 12  EQAHSLTVPAGMRNERLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRS 71
           E   S+ VP  +  ERLD+ L       + SR +++  I   +  +DG         +  
Sbjct: 63  ETPRSVVVPDELAGERLDKVLARVFP--EFSRNRLQSWIEAERVRIDGKPAKIRQP-VPL 119

Query: 72  GQRVELA--IAPAATAVEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLV 129
           G  +EL   + P   A  PE   L I++ D+ L+VI+KPAG+ VHP      GT+++ L+
Sbjct: 120 GATIELVPDLLPEQLAFTPEPVPLEIVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLL 179

Query: 130 HHFDALRAQEGFRPGIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGV 189
           + +    A    R GIVHR+DK+TSGL++VA +   +  L      RTV++ YLALV G 
Sbjct: 180 YRYGDAAAGLP-RAGIVHRLDKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGN 238

Query: 190 PPATGEVDAPIGRHPTHKVRMAVV--KGGKPARSEWRVLHAAPEGHYALVAVR--IHSGR 245
            P  G +DAPIGR P  + RMAVV    GKPAR+ +R + +A      + A+   + +GR
Sbjct: 239 MPEEGTIDAPIGRDPRERTRMAVVTSASGKPARTHFRRVDSAIWQRQPVTAIHCDLETGR 298

Query: 246 THQIRVHMAHAGFPLWGDQLYGPGTPARL---REQGYGARQMLHAWHLAFTHPVTGERLR 302
           THQIRVH AH G PL GD +YG     R       G+ ARQ LHAW L   HP TG  ++
Sbjct: 299 THQIRVHCAHIGHPLLGDPVYGRARGKRSVTPLPDGF-ARQALHAWRLGLIHPQTGRTMQ 357

Query: 303 FTCPPPQDFPDLAIAL 318
           +    P D   L+ AL
Sbjct: 358 WRADAPADMEALSAAL 373