Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 323 a.a., ribosomal large subunit pseudouridine synthase D (RefSeq) from Shewanella sp. ANA-3

 Score =  185 bits (470), Expect = 2e-51
 Identities = 123/305 (40%), Positives = 166/305 (54%), Gaps = 24/305 (7%)

Query: 27  RLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQRVEL------AIA 80
           RLD+ L E     D SR +IK  I      VDG +   P  ++   QR+E+       + 
Sbjct: 19  RLDQALAELFP--DYSRTRIKEWILSDAVYVDGVIVNKPREKVFELQRIEINATLEEEVH 76

Query: 81  PAATAVEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHFDALRAQEG 140
            AA A+E     L I++ D+ +LVI+K AGL VHP     +GTL++ L+HH   +     
Sbjct: 77  AAAQAIE-----LDIVYEDDDILVINKQAGLVVHPGAGNADGTLMNALLHHCPNIEHVP- 130

Query: 141 FRPGIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVPPATGEVDAPI 200
            R GIVHR+DKDT+GL++VA +   +  L  A   R + +EY A+V G   A G VD PI
Sbjct: 131 -RAGIVHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVLGTMTAGGTVDEPI 189

Query: 201 GRHPTHKVRMAVVKGGKPARSEWRVLHAAPEGHYALVAVRIHSGRTHQIRVHMAHAGFPL 260
           GRHPT +  MAV   GKPA + +RV  A    ++  + +R+ SGRTHQIRVHMA+ G  L
Sbjct: 190 GRHPTKRTHMAVHHSGKPAVTHYRV--AEKFRNHTRLRLRLESGRTHQIRVHMAYIGHVL 247

Query: 261 WGDQLYG--PGTPARLREQGYG-----ARQMLHAWHLAFTHPVTGERLRFTCPPPQDFPD 313
            GD +YG  P  P     + +       RQ LHA  L   HPVT E + +T P P+D   
Sbjct: 248 VGDPVYGGRPKPPKAASPEFFEILKNFKRQALHAVRLELAHPVTCEIMSWTAPIPEDMVI 307

Query: 314 LAIAL 318
           L  AL
Sbjct: 308 LTKAL 312