Pairwise Alignments

Query, 448 a.a., type I secretion membrane fusion protein, HlyD family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  328 bits (840), Expect = 3e-94
 Identities = 184/466 (39%), Positives = 282/466 (60%), Gaps = 21/466 (4%)

Query: 2   PLFQWKKRDSVAREDVQFMSEVDAALHRAGHPYAYLLSCAIFGVFAIFFVWAAFAPLDEV 61
           PL   +  + +  E++ ++ +  AAL       A ++   +   F +   WA++A +D+V
Sbjct: 17  PLMSNRSYNKLTAEELDYVDDKTAALLLNTPHSARIILWVMVAFFILAIAWASWAEIDKV 76

Query: 62  TRGQGQVIPSQRVQVIQNLEGGILRELLVHESQIVEKGDVLLRIDNEAAESFYRDALGKS 121
           T GQG+V+PS +VQVIQNLEGG+++++LV E + V+KG  L+ +D+    S +R+   + 
Sbjct: 77  TVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQQV 136

Query: 122 VEHQIAIARLEA--------------------ELEGRDPVYPAELMTEWPQVVENQADVY 161
                ++ +L A                    +L+     +P  L    P +VE Q D Y
Sbjct: 137 ANLTASVLQLSASISSVIIDENFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQY 196

Query: 162 RARRQQVAVEQRVLEAQLHQKEQEIEEMTSRKRQLEDSLRVAVEQREIARPLMEKQIYPR 221
           R     +  +  VL  Q+ QK+Q++ E  +R   L  S   A ++ +I  PL  + + P+
Sbjct: 197 RQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPK 256

Query: 222 VEYLSLEQKVISLRGEISSLAISIPKARAAADEAKERLAFRKAQIRSEALEELNKRRGEL 281
           +E L L++++   R E++S  + IP  ++A  EA         + R+E  ++LN+ + +L
Sbjct: 257 IELLKLQRQLNDTRRELTSTELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKL 316

Query: 282 NSLRETLSAGGDRVTRTDVRSPVRGTVKRLIINTVGGVIKPGEPIMEIVPLDDTLLIEAR 341
           +SL E+     D+V RT V SPV GTVK L +NTVGGVI+PG  I+EIVP +DTLL+EA+
Sbjct: 317 SSLTESAVGLEDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQ 376

Query: 342 IRPADIAFLHPDQKAVVKITAYDYSIYGGLEGVVEQISADTIEDRKGEFYYLVKLRTRKS 401
           I P DI FL PD  A+VK +AYD++ YGGLEG +E ISADT +D +G  +YLV++RT+++
Sbjct: 377 IAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEGTLEHISADTTQDEEGNSFYLVRVRTKET 436

Query: 402 AIVYRGEALPIMPGMTATVDILTGKKTVLDYLLKPILKAQQNALRE 447
            + +  + LPI+PGMTA+VDI+TGK+TVLDYLLKPIL AQ NALRE
Sbjct: 437 TLGH-DQNLPIIPGMTASVDIITGKRTVLDYLLKPILSAQSNALRE 481