Pairwise Alignments

Query, 456 a.a., type I secretion outer membrane protein, TolC family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 482 a.a., outer membrane channel protein TolC from Klebsiella michiganensis M5al

 Score = 74.7 bits (182), Expect = 6e-18
 Identities = 82/385 (21%), Positives = 159/385 (41%), Gaps = 23/385 (5%)

Query: 48  SNPKLKVFQENREAATHDLRRARAGWLPRVDVRAGY----GAEQYSDTTSRQSNKDDEFT 103
           SNP L+    +R+AA   +  AR+  LP++ + A Y    G   Y D  S  ++      
Sbjct: 35  SNPDLRKSAADRDAAFEKINEARSPLLPQLGLGADYTYTSGFRDYKDQNSNVTS------ 88

Query: 104 ERGDASAVLTQTVWDGFATSSRVDVGKAKLDSADNRLMDNAEALGLDAVLAHIEVLRQRE 163
                S  LTQ ++D  +    + + +      D     + + L L+   A+ +VL   +
Sbjct: 89  ----GSLQLTQVLFD-MSKWRALTLQEKNAGIQDVTYQTDQQTLILNTATAYFKVLAAID 143

Query: 164 IVRLSEINVQQHQTILGSQSERQKMGVASIADVTQTQGRLARAQSTLVESRSALEVAEAA 223
            +  +E   Q     L   ++R  +G+ +I DV   + +     +  V +R++L+ A   
Sbjct: 144 TLSYTEAQKQAIYRQLDQTTQRFNVGLVAITDVQNARSQYDAVLANEVTARNSLDNAVEE 203

Query: 224 YKRLTGMEVP--TELERAGIPDTAPASFETALGASLTANPKIAAYQSDIQAARGQEDLDK 281
            +++TG   P    L   G   T P++    L  +   N  +   +     AR Q    +
Sbjct: 204 LRQVTGNYYPELASLNVDGFKTTKPSAVNALLKEAENRNLSLLQARLSQDLAREQIRQAQ 263

Query: 282 SRFHPNVYLEVGPSYKE-RVESSESYAWGTTAM-----MRVNWNIYDGGADVAAVRGSAA 335
               P + L         R   S+S A           +  +  +Y GG   + V+ +  
Sbjct: 264 DGHLPTLNLNASSGVSNNRYSGSKSLAQDADVGQNKIGLSFSLPLYQGGMVNSQVKQAQY 323

Query: 336 RVRQSRQELQNLLDTLNEETRATWSRYLSAHEQSSFYTTAVTYNTQTRDTYMQQFLVGQR 395
               + ++L++   ++ +  R++++   ++    + Y  AV     + D     + VG R
Sbjct: 324 NFVGASEQLESAHRSVVQTVRSSFNNVNASISSINAYKQAVVSAQSSLDAMEAGYSVGTR 383

Query: 396 SLLDVLDAENELYSSEVQLVTAKAN 420
           +++DVLDA   LY+++ QL  A+ N
Sbjct: 384 TIVDVLDATTTLYNAKQQLSNARYN 408



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 350 TLNEETRATWSRYLSAHEQSSFYTTAVTYNTQTRDTYMQQFLVGQRSLLDVLDAENELYS 409
           TL   T   + + L+A +  S+         +  D   Q+F VG  ++ DV +A ++  +
Sbjct: 126 TLILNTATAYFKVLAAIDTLSYTEAQKQAIYRQLDQTTQRFNVGLVAITDVQNARSQYDA 185

Query: 410 SEVQLVTAKANEAGTAYRLLALGGNL---LASLSID 442
                VTA+ +       L  + GN    LASL++D
Sbjct: 186 VLANEVTARNSLDNAVEELRQVTGNYYPELASLNVD 221