Pairwise Alignments

Query, 456 a.a., type I secretion outer membrane protein, TolC family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 481 a.a., type I secretion outer membrane protein, TolC family from Sphingomonas koreensis DSMZ 15582

 Score =  109 bits (273), Expect = 2e-28
 Identities = 108/408 (26%), Positives = 181/408 (44%), Gaps = 17/408 (4%)

Query: 36  TKLKDSVLSTINSNPKLKVFQENREAATHDLRRARAGWLPRVDVRAGYGAEQYSDTTSRQ 95
           T L+ ++     +NP L   +    A    +  A+A   P +   A Y  ++Y  T++  
Sbjct: 35  TTLRAALRHAYRTNPGLTAARAGLRAIDEGVPIAKAAARPTLSATADY--QEYVLTSANS 92

Query: 96  -SNKDDEFTERGDASAVLTQTVWDGFATSSRVDVGKAKLDSADNRLMDNAEALGLDAVLA 154
            S     F   G+ S  L Q    G   ++ +    A+++S  + L      +    V  
Sbjct: 93  LSAPSRAFAANGNLSFPLFQ----GGRVANSIRAADARVESGRSNLRATEADVFNAIVSV 148

Query: 155 HIEVLRQREIVRLSEINVQQHQTILGSQSERQKMGVASIADVTQTQGRLARAQSTLVESR 214
           +++VLR   IV+L+  NV    T L +  +R ++G  +  DV Q++ RL+ A+  L  ++
Sbjct: 149 YMDVLRDEAIVQLNTRNVTVLATNLQASRDRFEVGDLTRTDVAQSEARLSLARGQLQAAQ 208

Query: 215 SALEVAEAAYKRLTGMEVPTELERAGIPDTAPASFETALGASLTANPKIAAYQSDIQAAR 274
           + L  +   Y R  G+ VP +L         P S E A   +L  NP + A ++D QAA 
Sbjct: 209 AQLIASRENYIRFVGL-VPGQLAYPAPLPGLPGSAEQATAIALGGNPLLDAARTDAQAAG 267

Query: 275 GQEDLDKSRFHPNVYLEVGPSYKERVESSESYAWGTTAM---------MRVNWNIYDGGA 325
               + ++   P +       Y   + S  S   G T +         +     +Y GG 
Sbjct: 268 YDVRVARAARLPRLSAVGSSGYNNYLGSLTSSLPGRTFLQSQTSATIGLSATIPLYQGGL 327

Query: 326 DVAAVRGSAARVRQSRQELQNLLDTLNEETRATWSRYLSAHEQSSFYTTAVTYNTQTRDT 385
             A VR + A   QS +++  +   +  E RA ++R+ +A E       AV  NT   + 
Sbjct: 328 PGAQVRRAQALHGQSLEQVTLVERRIVAEVRAAFARHRAALELIRSAEDAVAANTLAVEG 387

Query: 386 YMQQFLVGQRSLLDVLDAENELYSSEVQLVTAKANEAGTAYRLLALGG 433
              +  VG R++LDVL+AE EL ++ VQLVTA+ +    A+ LL   G
Sbjct: 388 VRAELTVGTRNVLDVLNAEQELLNARVQLVTARRDAYVAAFGLLVAMG 435