Pairwise Alignments

Query, 456 a.a., type I secretion outer membrane protein, TolC family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 506 a.a., type I secretion outer membrane protein, TolC family from Sphingomonas koreensis DSMZ 15582

 Score =  119 bits (297), Expect = 3e-31
 Identities = 105/419 (25%), Positives = 193/419 (46%), Gaps = 16/419 (3%)

Query: 38  LKDSVLSTINSNPKLKVFQENREAATHDLRRARAGWLPRVDVRAGYGAEQYSDTTSRQSN 97
           L+++++   N+NP L   +    A+  D+  AR+  LP +     Y    +   +S  S+
Sbjct: 44  LREAMVKAYNTNPTLFAERATLRASDEDVPIARSRGLPGLSSTGRYSENLHDSDSSGLSS 103

Query: 98  KDDEFTERGDASAVLTQTVWDGFATSSRVDVGKAKLDSADNRLMDNAEALGLDAVLAHIE 157
                  +G A   L+  V+ G A  + V   + ++++    L      L  D V A+++
Sbjct: 104 P-----RQGSAGLSLSVPVFSGGAVRNSVRAAETRVEAGRAGLRSVETQLFTDVVAAYLD 158

Query: 158 VLRQREIVRLSEINVQQHQTILGSQSERQKMGVASIADVTQTQGRLARAQSTLVESRSAL 217
           V+R    VRL++ NV+  +  L +  +R ++G  +  DV Q++ RLA AQS L  + + L
Sbjct: 159 VIRDEATVRLNQQNVRALEVNLQATRDRFEVGDLTRTDVAQSEARLAGAQSQLRGAEAGL 218

Query: 218 EVAEAAYKRLTGMEVPTELERAGIPDTAPASFETALGASLTANPKIAAYQSDIQAARGQE 277
             +   Y R+ G           +P+  P+S + A+ A+L  NP + A +    A+    
Sbjct: 219 ISSRENYIRVVGTPPGILAPPPPLPN-LPSSPDQAVSAALEDNPALDAAKKARDASAYDV 277

Query: 278 DLDKSRFHPNVYLEVGPSYKE---------RVESSESYAWGTTAMMRVNWNIYDGGADVA 328
            + ++   P V + V   Y           R     +  + T+A + +   ++ GG   A
Sbjct: 278 SVARAGRLPQVSVGVNGDYYNRFGAVPGPGRAAGLANDGFATSAGVNLTLPLFQGGRPAA 337

Query: 329 AVRGSAARVRQSRQELQNLLDTLNEETRATWSRYLSAHEQSSFYTTAVTYNTQTRDTYMQ 388
            VR + AR   + +++ +    +  +TR+ ++ + SA         AV  N  + +    
Sbjct: 338 QVRQAQARQSAAMEQVTSAERGVIAQTRSAYAVWQSAMRVIESSRLAVQANQLSLEGVRA 397

Query: 389 QFLVGQRSLLDVLDAENELYSSEVQLVTAKANEAGTAYRLLALGGNLLA-SLSIDRSEL 446
           +  VG R++LD+L+AE EL +S+VQLVTA+ +     + +LA  G   A  L +D   L
Sbjct: 398 ENSVGTRTILDILNAEQELLNSQVQLVTAERDAYVAGFAVLAAMGRAEAQDLGLDGGPL 456