Pairwise Alignments

Query, 456 a.a., type I secretion outer membrane protein, TolC family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 495 a.a., channel protein TolC from Cupriavidus basilensis FW507-4G11

 Score = 71.6 bits (174), Expect = 5e-17
 Identities = 87/392 (22%), Positives = 158/392 (40%), Gaps = 27/392 (6%)

Query: 61  AATHDLRRARAGWLPRVDVRAGYGAEQYSDTTSRQSNKDDEFTERGDASAVLTQTV--WD 118
           A+   L + R+G LP+V             T    S   D F    + S  L Q +  WD
Sbjct: 59  ASQEKLPQGRSGLLPQVSGTLNATRTNVDQTVPLVS---DRFINNNNWSLQLIQPLFRWD 115

Query: 119 GFATSSRVDV----GKAKLDSADNRLMDNAEALGLDAVLAHIEVLRQREIVRLSEINVQQ 174
            + T  + ++    G+     A   L+            A+ +VL  ++ + L+    + 
Sbjct: 116 RWETYKQGELAALAGEVTFSQAQLDLITRTSQ-------AYFDVLAAQDNLYLAGAQKKA 168

Query: 175 HQTILGSQSERQKMGVASIADVTQTQGRLARAQSTLVESRSALEVAEAAYKRLTGMEVPT 234
               L       ++G A+I D    Q R   A ST + ++S LE+  A  +++TG  V  
Sbjct: 169 IGEQLAQAKRNFEVGTATITDANDAQARYDLATSTEIAAQSDLEIRRANLQQITGKPVDE 228

Query: 235 EL---ERAGIPDTAPASFETALGASLTANPKIAAYQSDIQAARGQEDLDKSRFHPNV--- 288
            L     A +P   P    T    +   NP++   + ++ +A+ + +  +S   P+V   
Sbjct: 229 LLGLRTAATLPGPQPPDVNTWASQAENTNPQVGLARYNLDSAQREYNKARSGHLPSVDLV 288

Query: 289 ----YLEVGPSYKERVESSESYAWGTTAMMRVNWNIYDGGADVAAVRGSAARVRQSRQEL 344
               ++    +  ++V  S  Y       ++++  IY GG   + VR +AA   ++  +L
Sbjct: 289 ASYGFVNATGNAAQQVNVSSRYN-SAQIGVQLSVPIYTGGQIQSRVRETAALADKAASDL 347

Query: 345 QNLLDTLNEETRATWSRYLSAHEQSSFYTTAVTYNTQTRDTYMQQFLVGQRSLLDVLDAE 404
           +    T  +  R T+S   +   Q      A        ++    + VG R  +DVL+AE
Sbjct: 348 EFARRTAAQSARQTYSGVSNGLAQVKALEAAEHSAQSAVESNQLGYEVGVRINIDVLNAE 407

Query: 405 NELYSSEVQLVTAKANEAGTAYRLLALGGNLL 436
            +L+S+   L  A+ +      RL A  G L+
Sbjct: 408 AQLFSTRRDLAKARYDTIMNGLRLKAATGALI 439



 Score = 45.8 bits (107), Expect = 3e-09
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 1/168 (0%)

Query: 47  NSNPKLKVFQENREAATHDLRRARAGWLPRVDVRAGYGAEQYSDTTSRQSNKDDEFTERG 106
           N+NP++ + + N ++A  +  +AR+G LP VD+ A YG    +   ++Q N    +    
Sbjct: 255 NTNPQVGLARYNLDSAQREYNKARSGHLPSVDLVASYGFVNATGNAAQQVNVSSRYNS-A 313

Query: 107 DASAVLTQTVWDGFATSSRVDVGKAKLDSADNRLMDNAEALGLDAVLAHIEVLRQREIVR 166
                L+  ++ G    SRV    A  D A + L          A   +  V      V+
Sbjct: 314 QIGVQLSVPIYTGGQIQSRVRETAALADKAASDLEFARRTAAQSARQTYSGVSNGLAQVK 373

Query: 167 LSEINVQQHQTILGSQSERQKMGVASIADVTQTQGRLARAQSTLVESR 214
             E      Q+ + S     ++GV    DV   + +L   +  L ++R
Sbjct: 374 ALEAAEHSAQSAVESNQLGYEVGVRINIDVLNAEAQLFSTRRDLAKAR 421