Pairwise Alignments

Query, 468 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

 Score =  149 bits (375), Expect = 2e-40
 Identities = 120/453 (26%), Positives = 201/453 (44%), Gaps = 39/453 (8%)

Query: 12  VTVDALAPGGKAVCRHEGRVIFVDRGLPGQQLHVRLTTVRKRFAEAECLAVVTHTADECD 71
           VT++ L   G  +     + +FVD  LPG+++ ++LT  + ++A  + + V+  +A+   
Sbjct: 20  VTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVA 79

Query: 72  PFCPHFGDCGGCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFRNK 131
           PFC H+  CGGC  Q+L    Q+  K++ +   + +          P       QG+R +
Sbjct: 80  PFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSD--DQGYRRR 137

Query: 132 MEFAFTTDDR-EMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDD 190
              +   D + + L LG RR+    +V+VT C +   +   ++     +     L  W  
Sbjct: 138 ARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNAL-----LSEWS- 191

Query: 191 AAHRGFWRFLVVREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCVHSIRS 250
                        +P R G   V+ +   +     V R     + Q    +T       S
Sbjct: 192 -------------QPERLGH--VELVKGDNTRVL-VLRHLGALIEQDQQRLT----DFAS 231

Query: 251 QNSQVAY----GDATVFTEGEIVLTEKLGAIELDFGHDTFLQTNTRATELLYGEVERMAG 306
           QN    Y           +GE    E+ G+  L F    F+Q N    + +  +      
Sbjct: 232 QNQLTLYLMLEAGELQHVQGEAPYCEETGS-RLSFLPSHFIQVNRAVNQHMVVQALNWLE 290

Query: 307 LSGREHVWDLYCGVGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDV 366
           +S +E V DL+CG+G+  L LA+ A  + G+E     V+ A  NA+     +  F   ++
Sbjct: 291 VSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANL 350

Query: 367 RALLRSRSKGKAQEPIPDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARD-V 425
              + S S   AQ+    V++ DP RAG    ++D L      R+VYVSC+PAT+ARD  
Sbjct: 351 EQDMTSAS--WAQQKFAKVLL-DPARAGAE-GIVDQLSALGAKRVVYVSCNPATLARDSQ 406

Query: 426 GLLMQRYTLHEARPVDLFPHTPHVETVVLLSNK 458
            LL Q + L +   +D+FPHT H+E++ L   K
Sbjct: 407 SLLSQGFRLEKLGMLDMFPHTSHLESMALFVKK 439