Pairwise Alignments

Query, 394 a.a., conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 406 a.a., RNA-2',3'-PO4:RNA-5'-OH ligase from Xanthomonas campestris pv. campestris strain 8004

 Score =  189 bits (480), Expect = 1e-52
 Identities = 136/384 (35%), Positives = 182/384 (47%), Gaps = 36/384 (9%)

Query: 43  IDDKAWEQIENVLSLDCLVR-LAIMPDVHAGYDLCIGGVALLAGTISPGFVGYDIGCGMC 101
           ++++A  Q+ N+ ++  +   +A+MPDVH G    +G V    G I P  VG DIGCGM 
Sbjct: 27  LEEQALAQLRNIAAVPFVGPWVAVMPDVHLGKGATVGSVIPTRGAIIPAAVGVDIGCGMA 86

Query: 102 HVNTGRTVDELLPDALSRQRLFDRILHDIPVGTDMRGPGEFDAPRFLSASGDKGLTASVV 161
            V T     +L PD L++ R    I   +PVG    G          +     GL   + 
Sbjct: 87  AVRTTLRAKDL-PDNLAQLR--SSIERSVPVGNGRGGEHRNLPDSIATRIAQSGLVQRLE 143

Query: 162 A-----------KAARQMATLGGGNHFIEVGVNSRSEVGITLHSGSRRPGWDIAAWYMRQ 210
           A           K   Q+ TLGGGNHFIE+ ++    V + LHSGSR  G  I  +++ +
Sbjct: 144 AIKQTHRRIRTDKLECQIGTLGGGNHFIEICLDETDAVWVMLHSGSRGTGNLIGTYFIER 203

Query: 211 GR------------------LFALRTPMGQAYLKDMQWAQEYALANRRAMLALVLKAFPS 252
            R                   F    P+   Y++ + WAQ+YA  NR AM+A VL     
Sbjct: 204 AREQLANRVLGFHLPDKDLAFFMQGEPLFDEYVEAVSWAQDYARENREAMMARVLAEMRH 263

Query: 253 LDEATISHLLASTINENHNHAEVDGAN--VLHRKGATPAASGQPGIIPANQRDGVYITRG 310
                    LA   + N+   E  G    ++ RKGA  A +G+ GIIP +     YI RG
Sbjct: 264 RLPKFQLEKLAVNCHHNYVQKETHGGEELLITRKGAVSARTGELGIIPGSMGTRSYIVRG 323

Query: 311 LGNAYYLSSASHGAGRVMSRQKARAHIEQMTFERQMHGILCRTDKGVLDEAPDAYKPIAP 370
           LGNA    S SHGAGRVMSR  AR  I           + CR D  V+DE+P AYK I  
Sbjct: 324 LGNAESFHSCSHGAGRVMSRTAARQQITLAQHREATAHVECRKDAAVIDESPAAYKSIDA 383

Query: 371 VLAAQDGLLVDVVDHFRPVVVIKG 394
           V+AAQ   LV+V+   R VV IKG
Sbjct: 384 VMAAQQD-LVEVLHTLRQVVCIKG 406