Pairwise Alignments

Query, 394 a.a., conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 474 a.a., RNA-splicing ligase RtcB from Pedobacter sp. GW460-11-11-14-LB5

 Score =  139 bits (350), Expect = 2e-37
 Identities = 125/382 (32%), Positives = 168/382 (43%), Gaps = 42/382 (10%)

Query: 41  DAIDDKAWEQIENVLSLDCLVRLAIMPDVHAGYDLCIGGVALLAGTISPGFVGYDIGCGM 100
           D I++ A  Q+   + L   V  A+MPD H GY L IGGV      I P  VG DIGC M
Sbjct: 94  DYIEEGARNQMNIAMKLPVSVAGALMPDAHQGYGLPIGGVLATRNAIIPYGVGVDIGCRM 153

Query: 101 C-HVNTGRTVDELLPDALSRQRLFDRILHDIPVGTDMRGPGEFDAPRFLS-ASGDKGLTA 158
              +           DA+ ++ L          G +  G  + D     + A        
Sbjct: 154 ALSIFDIPEKHYFGKDAMYKRELI--AFTKFGAGQNFNGREKADHDVLENEAFNSTAFLK 211

Query: 159 SVVAKAARQMATLGGGNHFIEVGVNSRSE------------VGITLHSGSRRPGWDIAAW 206
           ++  KA  Q+ + GGGNHF+E G+   +E            V +  HSGSR  G  IA  
Sbjct: 212 NLHGKAWAQLGSSGGGNHFVEWGIIDFAERDEILNIDKGRYVALLTHSGSRGLGATIAGH 271

Query: 207 YMRQGR-------------LFALRTPMGQAYLKDMQWAQEYALANRRAMLALVLKAFPSL 253
           Y +  +                L +  GQ Y   M  A +YA A    +   + KA    
Sbjct: 272 YTKLAKDICKLPKEATNLAYLDLNSAEGQEYWIAMNLAGDYASACHEVIHKRLTKA---- 327

Query: 254 DEATISHLLASTINENHNHA---EVDGANVL-HRKGATPAASGQPGIIPANQRDGVYITR 309
               I   + + +  +HN A    +DG  V+ HRKGATPA  G  GIIP +     ++ R
Sbjct: 328 ----IGAKVLAKVENHHNFAWKEMLDGEEVIVHRKGATPAGKGVMGIIPGSMTAPGFLVR 383

Query: 310 GLGNAYYLSSASHGAGRVMSRQKARAHIEQMTFERQMHGILCRTDKGVLDEAPDAYKPIA 369
           G G    ++SASHGAGR+MSR KA   I +   +  +           LDEAP AYK I 
Sbjct: 384 GKGEMSAINSASHGAGRLMSRTKAIQSITKSDMKAILKDHNVTLIGAGLDEAPMAYKDIN 443

Query: 370 PVLAAQDGLLVDVVDHFRPVVV 391
            V+AAQ   LVDVV  F P +V
Sbjct: 444 KVMAAQTE-LVDVVAKFEPKMV 464