Pairwise Alignments

Query, 394 a.a., conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 375 a.a., RNA ligase RtcB family protein from Ralstonia sp. UNC404CL21Col

 Score =  105 bits (261), Expect = 3e-27
 Identities = 108/375 (28%), Positives = 166/375 (44%), Gaps = 51/375 (13%)

Query: 43  IDDKAWEQIENVLSLDCLVRLAIMPDVHAGYDLCIGGVALLAGTISPGFVGYDIGCGMCH 102
           I+  A  Q++   +LD +  +A MPD+H G    +G      G + P  +G DIGCGM  
Sbjct: 22  IEGDAIRQLQTTKALDGMRHVAGMPDLHPGRGYPVGAAFFSVGRLYPALIGNDIGCGMTL 81

Query: 103 VNTGRTVDELLPDALSRQRLFDRILHDIPVGTDMRGPGEFDAPRFLSASGDKGLTASVVA 162
            +T     ++  D L + RL +    D P+    R      AP       D G  A+   
Sbjct: 82  WSTHLDASKVSLDKLEK-RLGN---IDTPLDESWRELAAALAP------ADTGFDAA--- 128

Query: 163 KAARQMATLGGGNHFIEVGVNSR-----------SEVGITLHSGSRRPGWDIAAWYMR-Q 210
                + T+GGGNHF E+                 ++ + +HSGSR  G  I   ++R  
Sbjct: 129 -----LGTIGGGNHFAELQRIDEIYDAENLPLDPRQLLLLVHSGSRGLGQAILDEHVRAY 183

Query: 211 GRL-FALRTPMGQAYLKDMQWAQEYALANRRAMLALVLKAFPSLDEATISHLLASTINEN 269
           G    A       AYL     A  +A ANR  +   +L    +  +A         ++ +
Sbjct: 184 GHAGLAQDDAACAAYLTRHDTALHFAKANRELIARRMLDRLHAQGKA--------LLDVH 235

Query: 270 HNH---AEVDG-ANVLHRKGATPAASGQPGIIPANQRDGVYITRGLGNAYYLSSASHGAG 325
           HN    A V G    LHRKGATP+ +G   +IP ++ D  Y+     + + L S +HGAG
Sbjct: 236 HNFVAPATVFGERGWLHRKGATPSDAGVV-VIPGSRGDYSYLVAPRPSEHGLFSLAHGAG 294

Query: 326 RVMSRQKARAHIEQMTFERQMH------GILCRTDKGVLDEAPDAYKPIAPVLA-AQDGL 378
           R   R + +  + +     Q++       ++C   + + +EAP+AYKPI  V+A   D  
Sbjct: 295 RKWMRSECKDRLIRRFTPAQLNRTKLGSHVICEDKQLIYEEAPEAYKPIESVIAPLVDAG 354

Query: 379 LVDVVDHFRPVVVIK 393
           LV V+   RPV+  K
Sbjct: 355 LVKVLARLRPVLTYK 369