Pairwise Alignments

Query, 154 a.a., SsrA-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 167 a.a., tmRNA-binding protein SmpB from Xanthomonas campestris pv. campestris strain 8004

 Score =  134 bits (336), Expect = 9e-37
 Identities = 70/153 (45%), Positives = 97/153 (63%), Gaps = 1/153 (0%)

Query: 2   SKKAPGANVIAQNKKARHIYELSDNHEAGISLTGSEVKSLRAGHVNFRDSYVDFRNGEAF 61
           +K A     IA NK+ARH Y L + +EAG++L G EVK++RAG  N  D Y   R+GE +
Sbjct: 10  AKSATATKTIALNKRARHEYHLEERYEAGLALQGWEVKAIRAGRANIVDGYAYVRSGEIY 69

Query: 62  LVGLHIAPYDNAG-YAQHDPDRDRKLLLHAHEIENLARSVEQKGYTVVPTKLYFARGKVK 120
           L+G  I P   A  +      RDRKLLLH  EI+ +   VE++GYT+VPT LY++  KVK
Sbjct: 70  LIGAQITPLIQASTHVIPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTALYWSSNKVK 129

Query: 121 VDIAVGRGKKLHDQREDLKRRAEDRDTQRELAR 153
           ++IA+ +GK+ HD+R+  K R   RD QR + R
Sbjct: 130 LEIALAKGKQSHDKRDAAKERDWQRDKQRVMRR 162