Pairwise Alignments

Query, 346 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 377 a.a., tRNA-specific 2-thiouridylase MnmA (RefSeq) from Shewanella amazonensis SB2B

 Score =  179 bits (453), Expect = 1e-49
 Identities = 131/360 (36%), Positives = 183/360 (50%), Gaps = 28/360 (7%)

Query: 3   IAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPPTGHDP-------VPDIRAMCDRLGV 55
           + V MSGG DS  +  LLK+QG QV GL  +       D        + D +A+CD+LG+
Sbjct: 19  VIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDTDEYCAAAEDLKDAQAVCDKLGI 78

Query: 56  DLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHV-GAVHLATG 114
            LH V+    + ++V   F+ +Y  GRTPNP   CN  +KF    + A  +  A ++A G
Sbjct: 79  KLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADYIAMG 138

Query: 115 HYARLLRHPRWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAVRGELARRS 174
           HY R  R     T + RG+D  KDQSYFL  + H ++ +++FP+G   K  VR     + 
Sbjct: 139 HYVR-RRDTDGKTEMLRGIDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEVRRIAEEQG 197

Query: 175 IVPPLPSESQEICFVPDDDYRAFLKDRRVRLPG-PGPIVTTRGRKIGSHAGLWQYTEGQR 233
           ++     +S  ICF+ +  ++ FL      LP  PG I T  G  IG H GL  +T GQR
Sbjct: 198 LITHDKKDSTGICFIGERKFKDFL---ATYLPAQPGNIETPEGDIIGRHEGLMYHTLGQR 254

Query: 234 KGLGIAW-----HEPLYVVGKDMENNMLLVG-GRE--ALASPGCVAEE---VNLLVPYED 282
           KGLGI        +P YVV KDM  N+L+V  G E   L S G    +   V+   P + 
Sbjct: 255 KGLGIGGMKNSNDDPWYVVDKDMARNVLVVAQGHEHPRLMSKGMRVNQLHWVDRTGPADG 314

Query: 283 WPAEVAVRIRYRQQPLSARVTLRDGR-LYARFREPQPPAARGQVLAVYDMEHHVLGGGVI 341
             A ++V+ RYRQQ +   V + D + +   F EP      GQ    YD E   LGGG+I
Sbjct: 315 --ATISVKTRYRQQDIPCTVKIIDEQTIEVLFDEPVAAVTPGQSAVFYDGE-VCLGGGII 371