Pairwise Alignments

Query, 346 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 383 a.a., tRNA-specific 2-thiouridylase MnmA from Burkholderia phytofirmans PsJN

 Score =  169 bits (428), Expect = 1e-46
 Identities = 127/361 (35%), Positives = 176/361 (48%), Gaps = 27/361 (7%)

Query: 3   IAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPP--------TGHDPVPDIRAMCDRLG 54
           + V MSGG DS     LLKEQG  V GL  +            T  D + D+ ++ D +G
Sbjct: 6   VVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEYCSTRQDWI-DVVSVADLIG 64

Query: 55  VDLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAVHLATG 114
           +D+  V+    +++ V   F+ +Y  GRTPNP   CNA +KF    D A  +GA  +ATG
Sbjct: 65  IDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETIATG 124

Query: 115 HYARLLRHPRWGTV-LQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAVRGELARR 173
           HYAR+ ++ R G   L +  D  KDQSYFL  +  A+L K +FPLG   K  VR E+A +
Sbjct: 125 HYARVRQNERNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR-EIAEQ 183

Query: 174 SIVP-PLPSESQEICFVPDDDYRAFLKDRRVRLPGPGPIVTTRGRKIGSHAGLWQYTEGQ 232
             +P     +S  ICF+ +  +R FL   R     PGP+ TT G+ +G H GL  YT GQ
Sbjct: 184 IALPNAKKKDSTGICFIGERPFRDFL--NRYLPTKPGPMKTTDGKVVGEHIGLAFYTFGQ 241

Query: 233 RKGLGIAWH-----EPLYVVGKDMENNMLLVG-GREALASPGCVAEEVNLLVPYEDWPAE 286
           RKG+G+        EP +V GKD+ +N L V  G +            N      + PA+
Sbjct: 242 RKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHAWLLSHTLSAGNTSWVAGEPPAD 301

Query: 287 ---VAVRIRYRQQPLSARVTLR---DGRLYARFREPQPPAARGQVLAVYDMEHHVLGGGV 340
                 + RYRQ       +     +G     F   Q     GQ   +YD +   LGGG+
Sbjct: 302 GFACGAKTRYRQADAPCTFSSAGSGEGLFELNFDAAQWAVTPGQSAVLYDGD-VCLGGGI 360

Query: 341 I 341
           I
Sbjct: 361 I 361