Pairwise Alignments

Query, 421 a.a., sensor histidine kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1581 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 72.4 bits (176), Expect = 9e-17
 Identities = 71/267 (26%), Positives = 114/267 (42%), Gaps = 30/267 (11%)

Query: 154  LLRGLSHDFGNALASIMGFAEIARTRPVDDPL--LARSLDNVLKGCAQALSLMDRARAMA 211
            L  GL+HDF N L  ++G  ++ + R  +     L R +D       +A +L  R  A A
Sbjct: 1214 LTGGLAHDFNNMLTGVLGALDLIQRRVANGVTGDLDRYIDAATTSANRAAALTHRLLAFA 1273

Query: 212  GRQSPSFQVCDLEALVETWCGELMSGNDAVGQALVWHARTNGGCGLSSGTVQEGSDATVA 271
             RQS   +  D+  LV       +S  D + + +  H +           V+  SDA +A
Sbjct: 1274 RRQSLDPKPVDVNLLV-------VSMEDMLRRTMGEHIQLE---------VELQSDAWIA 1317

Query: 272  PSMRPTPMVVRCDPSLLQRAFVAIVDNARDAAETGETAG--GVHVRLFTDGATARRHAGW 329
             +          D   L+ A + +V NARDA   G   G    +VR+      A     +
Sbjct: 1318 YT----------DGHQLENALLNLVINARDAMPDGGRLGVNTCNVRIQHHQPDAPEPGDY 1367

Query: 330  CGIAVSDGGAGLSPEDFFRFGDPYRHAGGAREGRGNGVALARGIMRALGGALEVATFPGR 389
              ++V+D G+G+S +   +  DP+       +G G G+++  G  +  GG + + +  G 
Sbjct: 1368 VVLSVTDNGSGMSAQTIAKAFDPFFTTKPIGQGTGLGLSMVYGFAKQTGGHVRIDSRLGE 1427

Query: 390  GTVVYLLLPPAEGGDWLLPGTGPVGEV 416
            GT V L LP  +  D   PG     EV
Sbjct: 1428 GTQVILYLPRNQAEDAPPPGPQQQTEV 1454