Pairwise Alignments

Query, 421 a.a., sensor histidine kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 853 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 67.0 bits (162), Expect = 2e-15
 Identities = 68/266 (25%), Positives = 113/266 (42%), Gaps = 37/266 (13%)

Query: 144 QLPRRSVQAALLRGLSHDFGNALASIMGFAEIART--RPVDDPLLARSLDNVLKGCAQAL 201
           Q  +      L  G++HDF N L  I+G  ++ +   +        R +D  +    +A 
Sbjct: 474 QAQKMEAVGQLTGGIAHDFNNMLTGIIGGLDLIQRYIQSGRHGETQRFIDAAVTSANRAA 533

Query: 202 SLMDRARAMAGRQSPSFQVCDLEALVETWCGELMSGNDAVGQALVWHARTNGGCGLSSGT 261
           +L  R  A A RQ  + +  +L  L+E       S +D + + L  H   +         
Sbjct: 534 ALTHRLLAFARRQPLNLKRVELNQLIE-------SMHDLLSRTLGRHIHIDN-------R 579

Query: 262 VQEGSDATVAPSMRPTPMVVRCDPSLLQRAFVAIVDNARDAAETG-----ETAGGVHVRL 316
           +Q+G               V  D + L+ A + +V NARDA   G     ET    +V L
Sbjct: 580 LQQGL------------WPVSSDENQLESALLNLVINARDAMPDGGSLLLETR---NVEL 624

Query: 317 FTDGATARRHAG-WCGIAVSDGGAGLSPEDFFRFGDPYRHAGGAREGRGNGVALARGIMR 375
           ++ G      AG +  + ++D G G+S +      +P+       +G G G+++  G  R
Sbjct: 625 YSQGEVGDLAAGRYVILRLTDSGCGMSAKVLASVFEPFFTTKPIGQGTGLGLSMVYGFTR 684

Query: 376 ALGGALEVATFPGRGTVVYLLLPPAE 401
             GG +++A+ PG GT V L LP  E
Sbjct: 685 QAGGHIQIASEPGEGTQVSLYLPVYE 710