Pairwise Alignments

Query, 421 a.a., sensor histidine kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 997 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 85.9 bits (211), Expect = 5e-21
 Identities = 68/266 (25%), Positives = 106/266 (39%), Gaps = 27/266 (10%)

Query: 140 RTPEQLPRRSVQAALLRGLSHDFGNALASIMGFAEIARTRPVDDPLLARSLDNVLKGCAQ 199
           +T +QL +      L  G++HDF N L +++G  E+ R R   DP L R +DN   G  +
Sbjct: 620 QTLQQLHKMEALGNLTGGIAHDFNNLLMAVLGSLELLRRRMPPDPALLRLVDNARAGAER 679

Query: 200 ALSLMDRARAMAGRQSPSFQVCDLEALVETWCGELMSGNDAVGQALVWHARTNGGCGLSS 259
             SL  R  + A +Q       DL  L+E     L+S                       
Sbjct: 680 GASLTARMLSFARKQELHKTAIDLPVLIEDMRALLLS----------------------- 716

Query: 260 GTVQEGSDATVAPSMRPTPMVVRCDPSLLQRAFVAIVDNARDA-AETGETAGGVHVRLFT 318
                G    +   + P    V+ DP+ L+ A + +  NARDA A  G           T
Sbjct: 717 ---SLGPTIQLEVELPPQLARVKTDPNQLETALLNLAANARDAMAGEGRILITAEECALT 773

Query: 319 DGATARRHAGWCGIAVSDGGAGLSPEDFFRFGDPYRHAGGAREGRGNGVALARGIMRALG 378
                     +  +A+SD G G+      R  +P+    G  +G G G+++  G+    G
Sbjct: 774 SEQNGLPIGRYVCLALSDSGTGMDEVTLKRAVEPFFTTKGVGKGTGLGLSMVHGLAEQSG 833

Query: 379 GALEVATFPGRGTVVYLLLPPAEGGD 404
           G L + + PG GT   + LP  +  +
Sbjct: 834 GRLMLQSSPGLGTTAEIWLPALDNDE 859