Pairwise Alignments

Query, 275 a.a., amino acid ABC transporter, amino acid-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 305 a.a., ABC transporter from Herbaspirillum seropedicae SmR1

 Score =  105 bits (262), Expect = 1e-27
 Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 13/244 (5%)

Query: 24  GPAYDNVMKDKKIRVGLMTDSIPGGFYNEKGEWGGFDYDIATEIAKRMG-------VDIE 76
           GP    +     I +G  T SIP  +Y+E  +  G+  D+  ++   +        +++ 
Sbjct: 33  GPTLQKIKDANLIAIGHRTSSIPFSYYDENQQVIGYSQDLCNKVIDAVKTKIGAAKLEVR 92

Query: 77  RVQVNNKTRIAYVQQGRVDISVSNMTHTRERDKSVDFSITYFFDGQKVLAKKGQ-FKSVK 135
            V V ++ R   +Q G +D+     ++ + R + V F+  +F    ++L K+    K   
Sbjct: 93  MVPVTSQNRTPLLQNGTIDLECGVTSNLKSRWQQVSFATNFFVASSRILTKRDSGIKDFP 152

Query: 136 DMVGKKIATMQGTTSEVNVKRALKEAGDPNPDQSVISFQKESECFQALQMGRVAGWSTDA 195
           D+ GK + T  GTTSE  + R L E         + S +   E F  LQ GRVA +  D 
Sbjct: 153 DLAGKAVVTNAGTTSE-QLLRNLNE--HRKMGMQIQSAKDYGEAFLILQSGRVAAYVMDD 209

Query: 196 SILVGY--SAKEPGKFELVGNFLAEEPYGIAMPQDDSALRDAVNAALQDMWKDGTYKTIY 253
            +L G   +A++P  + L GN    EPY   + +DD   +  V+  L  + K G  K IY
Sbjct: 210 VLLAGARTTAQKPNDWVLTGNPFGAEPYAFMVRRDDPQFKQLVDDTLSGLMKSGEIKKIY 269

Query: 254 NKWY 257
            KW+
Sbjct: 270 AKWF 273