Pairwise Alignments

Query, 309 a.a., DNA-binding response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 260 a.a., two component transcriptional regulator, LytTR family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 74.3 bits (181), Expect = 3e-18
 Identities = 83/283 (29%), Positives = 116/283 (40%), Gaps = 61/283 (21%)

Query: 34  EAAGAEEALALLNALPYGAVFLGISLAEGPDGMEVARRLMGNRDH----PALIFIADDES 89
           EAA A EAL  L    +  VF  I +  G DG  V R            P  +F+   + 
Sbjct: 32  EAASASEALRKLAEEKFDLVFQDIQMP-GHDGFHVQREAQAQAQPGEAGPFFVFVTAFDE 90

Query: 90  RAFEAFELDATDYLIFPCAADRFDRTLMRLRQFRTHFRLAPAPGSRWREQPQAAPEELPP 149
            A  AFE +A DYL+ P    R  R L R+R      RLA A G+R              
Sbjct: 91  HAIRAFEENALDYLLKPVVPARLARCLDRVRG-----RLA-ADGTR-------------- 130

Query: 150 PAMDDLPPPGTEEGPPFETLQLPLAEDEQDTLISALGEAVDYSQRVRPVELDKLAVSVDG 209
                                 PL ++   TL+ ALG +       +PVE  +LA+   G
Sbjct: 131 ----------------------PL-QNAMATLLGALGHS-------KPVE--RLAIEQGG 158

Query: 210 KTLLIPYGEIAFVEAYEDYSYVHTADDKYLTSYRLKNL---EGRLRPHRFFRVHRKYLVN 266
           +  LIP  ++  +EA E+   V   D+  L  + +  L   E RL    FFRV+R  LVN
Sbjct: 159 RISLIPTRDVVMIEA-EEKRIVAVTDEGRLPCHNMNTLARAEERLAGLPFFRVNRAVLVN 217

Query: 267 LDMVTELAAVSGGNCLLRTAGRTRIELPISRRRLGELKQILGL 309
           L+ + E +    G   L      R E+ +SR R  + +  LG+
Sbjct: 218 LERIAEFSPWINGKYHLVMNDPDRTEVTVSRNRARDFRARLGV 260