Pairwise Alignments

Query, 309 a.a., DNA-binding response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 234 a.a., two-component system response regulator protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 54.7 bits (130), Expect = 2e-12
 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 3   RLSTLLVHPDPMLRHRLRAMLEPVDFLRVLGEAAGAEEALALLNALPYGAVFLGISLAEG 62
           ++  ++   +P+ R  LR  +E VDFL + GE   A +   +L       +FL I + E 
Sbjct: 2   KIKCIITDDEPIARKGLRGYIEKVDFLTLTGECEDAVQLNTILKTQEIDLLFLDIEMPE- 60

Query: 63  PDGMEVARRLMGNRDHPALIFIADDESRAFEAFELDATDYLIFPCAADRFDRTLMRL 119
             G+E+   L    + P +I ++  E  A + +E +  DYL+ P + DRF +++ ++
Sbjct: 61  MTGIELLSNL---TNPPKVIIVSAYEQYALKGYEFNVVDYLLKPVSFDRFIKSVNKI 114



 Score = 44.7 bits (104), Expect = 2e-09
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 162 EGPPFETLQLPLAEDEQDTLISALGEAVDYSQRVRPVELDKLAVSVDGKTLLIPYGEIAF 221
           +G  F  +   L     D  I ++ +  D  Q  +  + D + V  +     I + +I +
Sbjct: 88  KGYEFNVVDYLLKPVSFDRFIKSVNKIYDLLQTEQKEKNDYIFVKSNKLLKKILFKDILY 147

Query: 222 VEAYEDYSYVHTADDKYLTSYRLKNLEGRLRPHRFFRVHRKYLVNLDMVTELAAVSGGNC 281
           +E+ E+Y  + T   K +    LK L   L    F + HR Y+VNL+ VT   A+ G   
Sbjct: 148 IESMENYVVIQTVSCKEVVYTTLKQLNDSLPKDVFQQTHRSYIVNLEKVT---AIDGNQL 204

Query: 282 LLRTAGRTRIELPISR 297
            L     +  ++P++R
Sbjct: 205 TL-----SSYKIPVAR 215