Pairwise Alignments

Query, 665 a.a., sensory box histidine kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 823 a.a., PAS/PAC sensor signal transduction histidine kinase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  355 bits (911), Expect = e-102
 Identities = 260/730 (35%), Positives = 362/730 (49%), Gaps = 90/730 (12%)

Query: 3   AGRSSHDTGEELERLREEVRLLREALRLASSTL------PTGPDVAGCMSDIVHALPVLA 56
           A RS     EEL+RLR E+ +LR  LR A + L      P  PD+      ++ A+PVLA
Sbjct: 71  AHRSVQTPEEELQRLRAELAVLRHRLRKAEARLLPLDADPETPDM------LLDAVPVLA 124

Query: 57  FCCDTDGRVVTANSRFAAMC---QCSPVSRTLRDVLPTATVDELLCLVERAWQAQDVRSG 113
            C D DGRV   N  F ++    +       L  ++P     +L  L+ RA+  +   +G
Sbjct: 125 LCIDADGRVRMVNRGFESLFGIWRMEARGHRLEGLVPPEVSAQLSPLLARAFAGEQRVTG 184

Query: 114 VVPMPPGL----FQCVVQPR-LDAAGRLSRVLCVGHDVSGL------LRGNHELVHALVG 162
            + +        F   +  R L  +G + RVL VG +++        LR   E   AL+ 
Sbjct: 185 ELAVSGHAGERWFNITLAGRGLPGSGIMCRVLLVGVEITEAVTARRALREVGETRRALLD 244

Query: 163 ASPVTTLLLDRECTVLLGNASAAALMLWPPEGQGDGDC-FRFLPEDIATRRREEVLRCFE 221
           A+P    L++ + T++  N SAAA   W       G+  F  +P  +A RRREE+ RC  
Sbjct: 245 AAPGAAFLMEPDGTIVAHN-SAAARHAWRDGQDMVGESVFALMPPGMAARRREELARCVA 303

Query: 222 TGCAVEFEDTQDGRTYHHFVRPIPARDHGATVVGEVAVYSLDVTLPRRAEADLRAAARLH 281
           TG    FE+   GR   H + P+         V ++AVY  DVT  RRAE +L+A     
Sbjct: 304 TGRGGYFEEHDGGRVLRHNLAPVFDVQGR---VAQIAVYLHDVTSQRRAEEELQATLERK 360

Query: 282 AALAEASSRQFDRQSALLDRVFDEVPAGICLMDITGRVLHLNRAMADVVGASETELVGTD 341
             +  A      R   LL R++D+VP G+      G V+  NRA+  + G + +E+ G  
Sbjct: 361 DRMVHAHEAALGRHERLLRRIYDDVPVGLLHTSAAGNVIEANRALCAITGLTLSEMRGMH 420

Query: 342 CFAMLHPADRAAARALFMHDLENAGSPEGFHELKEYRFLRKDGTARECQVASAMLRDGDG 401
              ++ P  R +       +         F    E R  R DG  R C+V S ++   D 
Sbjct: 421 VLDLVLPEYRESLAYEMRRNRAERDRVARF----EVRVRRPDGEIRLCRVTSTVIWGTDD 476

Query: 402 -PILGMAVVTDVTEMRRIKAEAARMGQLATIGELAAGVAHEINSPANAIINCADLLMEDA 460
            P+ G+ VV D TE+ R++AEA R GQLA +GELAAGVAHEIN+P   IINCA LL++DA
Sbjct: 477 LPLFGLGVVEDQTELHRLRAEAVRAGQLAALGELAAGVAHEINNPITGIINCAQLLLDDA 536

Query: 461 FDSAM-------VRDMARRIRSEGQRVAAITHNLLAFARERKPPPPPALVDVKVVLRDTL 513
             SA          ++A RI  EGQR+A I  NLL F R+R+       VD++ VL DTL
Sbjct: 537 DVSAQGGMRHEPQPELAGRILREGQRIAGIVRNLLFFGRDRR--DTDVRVDLREVLHDTL 594

Query: 514 ELTAAQMRAEGILLEVSCSSGALHVLGRTRELQQVFLNIVSNARHALNAI-------PGS 566
            LT   M  +G+ ++++     L V+GR  ELQQVF+N+++NA HALNA        PG+
Sbjct: 595 ALTRTLMEGDGVDIQLNLPDLPLMVVGRPGELQQVFMNLLANAHHALNAAATGGQGEPGA 654

Query: 567 AAR------------------------------------CLSINAEPRAAGS--CVSGPV 588
             R                                    C+      R  G    VSGP 
Sbjct: 655 VPRPRRLTLTAARSSLGPQREAARKGVSLDGGGDGCRGICIPERRATRRRGGRLTVSGPC 714

Query: 589 VSVSFRDTGGGIDPSIRDRVMEPFFTTKGEGRGTGLGLSISNAIIEDHGGVLCIESDGET 648
           V V+  DTG GI P++ DRV EPFFTTK EG+GTGLGLSIS  I++ HGG L ++SDG +
Sbjct: 715 VCVTVADTGTGIAPAVLDRVFEPFFTTKPEGKGTGLGLSISYGIVKSHGGTLVLDSDGVS 774

Query: 649 GTCVTVELPQ 658
           G+   V LP+
Sbjct: 775 GSRAVVVLPE 784