Pairwise Alignments

Query, 665 a.a., sensory box histidine kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 782 a.a., PAS domain S-box-containing protein from Paraburkholderia bryophila 376MFSha3.1

 Score =  126 bits (317), Expect = 3e-33
 Identities = 122/420 (29%), Positives = 194/420 (46%), Gaps = 32/420 (7%)

Query: 258 AVYSLDVTLPRRAEA--DLRAAARLHAALAEASSRQFDRQSALLDRVFDEVPAGICLMDI 315
           A+ S D TL    E   D+     +H A+ E S R+F     L+D V D     I ++  
Sbjct: 108 ALRSQDGTLLGYGEIVRDMTDKKTVHDAVLE-SERRF---RLLVDGVTDYA---IFMLSP 160

Query: 316 TGRVLHLNRAMADVVGASETELVGTDCFAMLHPADRAAARALFMHDLENAGSPEGFHELK 375
            G V + N     + G + +E++G+       P D  A   L    L  A + +G  E +
Sbjct: 161 EGMVTNWNSGARRIKGYTASEIIGSHFSRFYTPED--AGSGLPQRGLA-AAARDGRFEAE 217

Query: 376 EYRFLRKDGTARECQVASAMLRDGDGPILGMAVVT-DVTE-------MRRIKAEAARMGQ 427
            +R +RKDG+     V    +RDG G ++G A +T D+TE       +   +    +  +
Sbjct: 218 GWR-VRKDGSRFWAHVVIDAIRDG-GALVGFAKITRDITERMEANRLLEETRIALVQSQK 275

Query: 428 LATIGELAAGVAHEINSPANAIINCADLLMEDAFDSAMVRDMARRIRSEGQRVAAITHNL 487
           +  IG+L  GVAH+ N+    +    +LL          R+   +     +R A +   L
Sbjct: 276 MEAIGKLTGGVAHDFNNVMQILRGNLELLESRHKRDGWTRERLDKAIDAVERGAKLASQL 335

Query: 488 LAFARERKPPPPPALVDVKVVLRDTLELTAAQMRAEGILLEVSCSSGALHVLGRTRELQQ 547
           LAF R++  P  P ++++   +R   +L    +  E + +E   S G  + L    +++ 
Sbjct: 336 LAFGRQQ--PLRPIVINLAAAIRGMDDLLRRAL-GETVEIETVVSGGLWNTLVDVHQMEN 392

Query: 548 VFLNIVSNARHALNAIPGSAARCLSINA---EPRAAG--SCVSGPVVSVSFRDTGGGIDP 602
           V LN+  NAR A+    G        NA   +   AG     SG  V ++  DTG G+ P
Sbjct: 393 VILNLAINARDAMKE--GGKLTMEVSNAMLDDQYVAGFPDVPSGQYVMLAVTDTGTGMAP 450

Query: 603 SIRDRVMEPFFTTKGEGRGTGLGLSISNAIIEDHGGVLCIESDGETGTCVTVELPQMVED 662
            I  R  +PFFTTK EG GTGLGLS++   ++  GG + I S+   GT V + LP+ +E+
Sbjct: 451 DIVQRAFDPFFTTKPEGEGTGLGLSMAYGFVKQSGGHIRIYSEVGHGTTVKIYLPRSMEE 510



 Score = 35.4 bits (80), Expect = 1e-05
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 317 GRVLHLNRAMADVVGASETELVGTDCFAMLHPADRAAARALFMHDLENAGSPEGFHELKE 376
           GR+   N     + G  E E+VG          +RA         L+ A S EG  E + 
Sbjct: 34  GRIRSWNAGGEAIHGFREDEVVGKPLDIFYTAEERAKGSP--QRALDTARS-EGRFESEG 90

Query: 377 YRFLRKDGTARECQVASAMLRDGDGPILGMA-VVTDVTEMRRI 418
           +R LRKDG A    V    LR  DG +LG   +V D+T+ + +
Sbjct: 91  WR-LRKDGKAFWASVVLTALRSQDGTLLGYGEIVRDMTDKKTV 132