Pairwise Alignments

Query, 295 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  173 bits (439), Expect = 3e-48
 Identities = 97/272 (35%), Positives = 151/272 (55%), Gaps = 30/272 (11%)

Query: 19  LLVLVGGAAWFVWRMDDVIHYRWHWGRVLEGLVYVTPQGEWHAGPLARGLAGTVRLSLWA 78
           ++++  G  W +    + + Y W W RV E  V +   GEW AG L  GL  T++L+  +
Sbjct: 17  MMLVFAGLVWLLDSGAEAMGYTWQWHRVPE-YVLIFEDGEWWAGDLLHGLLVTLQLTGIS 75

Query: 79  MLAALLLGTVAGLLRTRRRLLARLLAGTYVDSVRNLPALVLIFVMYFFISSLVLPALGLE 138
           ++  L LG    LLR  R L+ R L   Y+  VRN P LV I+++YF             
Sbjct: 76  LIFTLALGLTTALLRQSRSLVGRALGTGYIAVVRNTPLLVQIYLLYF------------- 122

Query: 139 ESVRGLPPGGRAVVGWLFAPVEQLSAFLSAVVTLAIYEGAYISEIVRAGIESVPRGQWDA 198
                           +F PV  L  F +AV+ LA+++GAY +E+ R G+ S+P+GQ++A
Sbjct: 123 ----------------VFGPVIGLDRFATAVLALALFQGAYTAEVFRGGLNSIPQGQYEA 166

Query: 199 SSSFGLGPVQQMRHVILPQALRHAVPPLAGQFISIIKDSAIVSVISVPELTFQGMELMAA 258
           + S GL        VILPQ L+  +PPL  + +S+IK+S+IVSV+++ +LT QG  +++ 
Sbjct: 167 ARSLGLSRFFTFYDVILPQLLQRTLPPLTNEMVSLIKNSSIVSVMAIFDLTTQGRNIVSE 226

Query: 259 TYQTFEIWTTIALLYLVLTLGCSLVAERLERR 290
           T   FEIW ++A +YL+LTL  S ++  LE +
Sbjct: 227 TAMPFEIWFSVAAIYLLLTLTLSALSAWLEHK 258