Pairwise Alignments

Query, 191 a.a., sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 207 a.a., sigma 54 modulation protein / SSU ribosomal protein S30P from Synechococcus elongatus PCC 7942

 Score = 79.7 bits (195), Expect = 3e-20
 Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 14/196 (7%)

Query: 1   MRYQITGKQIDIGEALQRHVKAELSEVVGKYAERPTDANVVFS-----KDAYNHVCEATV 55
           M+  + G  ID+  A+  +V+ +L + V  Y    T+ +V  S     K       E T+
Sbjct: 1   MKLVVQGTNIDVTAAIHDYVQQKLDKAVSHYQSFLTEIDVHLSVAKHAKSNPRQTAEVTI 60

Query: 56  HLSTGLTAQAKASAHEIYAAFDKCSEKMEKQLRRYKRRLKNHHRDRTEPVALSGASTYIL 115
           + + G   +A+     +YA+ D  S+K+ +QL++YK +L    RDR   ++ +  +  + 
Sbjct: 61  Y-ANGTVIRAEECNENLYASIDLVSDKITRQLKKYKEKL----RDRKGQLSTAETADQLS 115

Query: 116 DGSEGSD---EHEPETLQPIIVAEMETTIPSVSVGEAVMQMELAEAPVLVFRNEGHGGIN 172
           DG+  +D     +PE  Q I+  +    +P+++V +A+ Q++L +    +FRN   G IN
Sbjct: 116 DGALVTDLLNGRQPELPQDIVRTKY-FAMPAMTVEDALAQLQLVDHDFYMFRNAATGEIN 174

Query: 173 VVYRRDDGNIGWIDTK 188
           V+Y R+ G  G I  +
Sbjct: 175 VIYERNHGGYGVIQPR 190