Pairwise Alignments

Query, 372 a.a., DNA polymerase III, beta subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 372 a.a., DNA-directed DNA polymerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  402 bits (1033), Expect = e-117
 Identities = 206/372 (55%), Positives = 270/372 (72%)

Query: 1   MKISIERATLLRAVSQAQSVVERRNTIPILANVLIEAEGDSVSFRATDLDIEVVDRVTAQ 60
           MK++IER  LL+++   QSVVERRNTIPIL+NV +E      S  ATD+D+E+V+ VTA 
Sbjct: 1   MKLTIERTALLKSLGHVQSVVERRNTIPILSNVRMETGESGFSLNATDMDLEIVETVTAT 60

Query: 61  VERAGATTVPAVTLHEIVRKLPDGALVALTHDTAKGRLEVSAGRSNFSLATLPREDFPVM 120
               GATT PA TL++IVRKLPDG+ V L++D   G+L + AGRS FSL+ LP EDFP +
Sbjct: 61  TLAPGATTAPAHTLYDIVRKLPDGSQVELSYDGNDGQLVLKAGRSRFSLSCLPVEDFPAL 120

Query: 121 TTTEYTCNFAAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADGENGRSLRCVATDGH 180
           +  E++ +F+ PA  LR L D+++FAISTEETRYYLNG+Y+H  +      LR VATDGH
Sbjct: 121 SAGEFSHSFSLPATDLRGLIDRTRFAISTEETRYYLNGIYLHATESAGVPVLRAVATDGH 180

Query: 181 RLARIDADLPDAAEGMPGVIVPRKTVGELRKLLEDDEAQIAVSVSETKIRFATPEITLTS 240
           RLAR +  LP  A GMPGVIVPRKTVGELRKL+E+    I V +SE KIRF   E  LTS
Sbjct: 181 RLARAEIPLPAGAAGMPGVIVPRKTVGELRKLIEETGMDITVGLSEQKIRFDFDETRLTS 240

Query: 241 KVIDGTFPDYTRVIPVSNSRKLEVDASEFAKAVDRVATVSSERSRAVKLALDEDRLILSV 300
           K+IDGTFPDY RVIP  N + LEVD   FA+A DRV+ +S+E+SRA+K+A+ +  + LS 
Sbjct: 241 KLIDGTFPDYERVIPTENDKVLEVDCKLFAQAADRVSAISTEKSRAIKVAVAKGTMTLSA 300

Query: 301 NAPDSGAAEEELAVAYGDERLEIGFNAKYLLEIASQVDRENAVFLFNSAADPTMMREGSD 360
           ++PD+G+A EE+  AY    LEIGFN++YLL+I  QV+  +    F  AA PT++R+ +D
Sbjct: 301 SSPDAGSAVEEIEAAYQSTSLEIGFNSRYLLDILGQVEGGSVRLTFADAASPTVIRDVAD 360

Query: 361 SSAIYVVMPMRV 372
           +SA+YV+MPMRV
Sbjct: 361 ASAVYVLMPMRV 372