Pairwise Alignments

Query, 679 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 709 a.a., ATP-dependent DNA helicase RecQ from Pseudomonas fluorescens FW300-N2E3

 Score =  541 bits (1394), Expect = e-158
 Identities = 283/603 (46%), Positives = 377/603 (62%), Gaps = 7/603 (1%)

Query: 1   MPSADTILSSVFGFSEFRPGQEEVVDAVCAGEDVLAIMPTGGGKSLCFQLPALAREGLTV 60
           +  A  +L  +FG+  FR  Q  +++ V +G D L +MPTGGGKSLCFQ+PAL R+GL V
Sbjct: 2   LEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRDGLAV 61

Query: 61  VISPLIALMRDQVRGLREAGVAAGALTSGNTPEETDAVFEALEDGSLKILYMAPERLAHG 120
           V+SPLIALM DQV  L E GVAA AL S  + E+   +   ++ G +K+LY+APERL   
Sbjct: 62  VVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQP 121

Query: 121 GTVRLLSRAGVGLLAVDEAHCVSQWGHDFRPDYLRIGDLRRAL-DVPVAAFTATADAETR 179
             +  L    + L A+DEAHCVSQWGHDFR +YL++G L     +VP  A TATAD  TR
Sbjct: 122 RMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPNVPRIALTATADKRTR 181

Query: 180 DEIIARLFPDTAPRVFLRGFDRPNIHLAFAAKDSPRRQILDFAGARKGQSGIVYCGTRAK 239
           +EI+ RL    A R FL  FDRPNI      K+ PR+Q+L F   R+  +GIVYC +R K
Sbjct: 182 EEIVERLHLQNAER-FLSSFDRPNIFYRIVPKEQPRKQLLAFLAERRSDAGIVYCLSRKK 240

Query: 240 TEGLAQALREAGHMACHYHGGMEAEDRRIVETRFQREDSLIVVATVAFGMGVDKPDIRWV 299
            + +A  L E G  A  YH G+  + R   + RF  E+ LI+VATVAFGMG+DKP++R+V
Sbjct: 241 VDEVAVFLSEQGFPALPYHAGLPNDTRAHHQKRFLNEEGLIMVATVAFGMGIDKPNVRFV 300

Query: 300 AHADLPKSIEAYYQEIGRAGRDGAPAETLTLFGPDDIRLRRSQIDEGLAPPERKGADHGR 359
           AH DLPKS+EAYYQE GR GRDG PA+    +G  D+ + +  +         K  +  +
Sbjct: 301 AHLDLPKSLEAYYQETGRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHK 360

Query: 360 LNALLGLAEALRCRRQVLLSYFGED-SAACGNCDLCDTAPEVFDGTDAVRKALSAVLRTG 418
           L+A+L L E  RCRRQ LL+YF ED    CG+CD C    + +D T+  R+ALSA+ RTG
Sbjct: 361 LDAMLSLCEETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVQTWDATEPARQALSAIYRTG 420

Query: 419 ESFGAGHLIDILTGNATDKVRQRGHEDLPTFGVGRDLDKRTWQGVFRQMMGHDLLRPDAA 478
           + +G GHL+D+L G   +KVR  GH+ L  FGVG+   +  W+ +FRQ++   L   D  
Sbjct: 421 QRYGVGHLVDVLLGKDNEKVRSFGHQHLSVFGVGKARAEGEWRSLFRQLVARGLADIDLE 480

Query: 479 RHGALVMTDAARPLLRGETTIELRRD----TLRKAAHRPAVRALVSDEDAPLLSALKAKR 534
            +G L ++D+ RPLL+GE T+ELRRD    T  K++       LV  E+     AL+A R
Sbjct: 481 GYGGLRLSDSCRPLLKGEVTLELRRDLKPQTTAKSSSTSQASQLVRGEEREQWEALRALR 540

Query: 535 RALAEAAGVPAYVIFTDRSLIEMAERRPDTLDAFAGISGVGAKKLEKYGAAFLEVIAGDR 594
           R LA   GVP YVIF D +L+EM   +P +L   A +SGVGA+KLE+YG AFLEV+ G  
Sbjct: 541 RKLAGEHGVPPYVIFPDSTLLEMLRSQPSSLPEMAKVSGVGARKLERYGEAFLEVLGGQA 600

Query: 595 PTP 597
             P
Sbjct: 601 EAP 603



 Score = 29.3 bits (64), Expect = 7e-04
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 618 LEAQAALLRGAAGTDKPLSCSAAILSRVAETRPRDEDDMVRI--LGDRRAERFGAAFLEV 675
           L A    L G  G    +    + L  +  ++P    +M ++  +G R+ ER+G AFLEV
Sbjct: 536 LRALRRKLAGEHGVPPYVIFPDSTLLEMLRSQPSSLPEMAKVSGVGARKLERYGEAFLEV 595

Query: 676 L 676
           L
Sbjct: 596 L 596