Pairwise Alignments

Query, 289 a.a., chemotaxis protein MotA (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 286 a.a., flagellar motor protein MotA from Herbaspirillum seropedicae SmR1

 Score =  224 bits (570), Expect = 2e-63
 Identities = 121/286 (42%), Positives = 176/286 (61%), Gaps = 3/286 (1%)

Query: 1   MIGIIGIVVVFVMVFGGYLAAGGKMGIILKSLPFEMTMIGGAAVGAFVIGNDMSGIKHTL 60
           ++ IIG +VV   VFGG+  AGG +G + +  P E+ MIGGAA GAF++GN+   IK TL
Sbjct: 1   LLVIIGYIVVMASVFGGFAMAGGHLGALFQ--PIELLMIGGAAGGAFLVGNNGKAIKATL 58

Query: 61  KDVKKVFKGPTWLAQDYKDLLCLLFELIRLARQNPV-GLEEHIEDPAASNIFSKYPKIMA 119
           K +  VFKG  +    Y +L+ LLFE++  +R+  +  +E  IE+P +S IFSKYP ++A
Sbjct: 59  KALPTVFKGSAYTKALYMELMALLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLA 118

Query: 120 DREAIDLIADTMRSAAMNYDDPHQVEEVLEKRIESNHEHAMHGSHALQTVADGLPALGIV 179
           D   I+ + D +R       D  Q+E +++  IE++H       H +  + DG+PA GIV
Sbjct: 119 DHHLIEFMTDYLRLMVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKLGDGMPAFGIV 178

Query: 180 AAVLGVIKTMGSIDQPPEILGKLIGGALVGTFLGVFLAYGLVGPFSAKVKSVVEEDAHFY 239
           AAV+GV+ TM S+  PP  LG LI  ALVGTFLG+ LAYG VGP S+ ++  + E    Y
Sbjct: 179 AAVMGVVHTMESVGIPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIY 238

Query: 240 LLIREVLVANLHKHTVNNCIEVGRQNTPSHIRPTFSDLEEALKQLK 285
             ++  L+A+L+ +     IE GR+   S  RPTF +LEE +KQ +
Sbjct: 239 QCVKVTLLASLNGYAPALSIEFGRKVLFSTERPTFLELEEHVKQAR 284