Pairwise Alignments

Query, 257 a.a., type III secretion system inner membrane R protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 260 a.a., Flagellar biosynthesis protein FliR from Pseudomonas fluorescens FW300-N2E2

 Score = 80.5 bits (197), Expect = 3e-20
 Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 17/234 (7%)

Query: 16  FILALLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLATGAPPLERPADWVLA 75
           FIL L R+ A +  +P FG   VP R++L   LA+T ++ P     G PP+       L+
Sbjct: 18  FILPLFRVTAVLMSMPVFGTTLVPTRVRLYFALAITVVIAP-----GLPPMPPVNALDLS 72

Query: 76  G----GAEVVSGLFLGFTFRLMVFALQVAGTIAAQSTSLAQVFGGAVTPD---PQPALGN 128
           G      +++ G  +GF+ +L   A  VAG I   S  +   F   + P        +G 
Sbjct: 73  GLMLIAEQILIGALMGFSLQLFFQAFVVAGQII--SIQMGMAFASMIDPTNGVNTAVIGQ 130

Query: 129 IFLMAGLALAALSGLHVHLTEAFLLSFLLLPVGNFPNSDIISAWAIA-DVSRMFVVGFTL 187
              M    L      H+ + E    SF  +PVG+     +   W IA  +  +      L
Sbjct: 131 FLTMLVTLLFLAMNGHLVVFEVLTESFTTMPVGS--ALLVNHFWEIAGKLGWVLGAAMVL 188

Query: 188 SAPFVAAAMLYNLALGAINRAMPQLMVAFVGAPALTLGGLALAALSVPFLLTHW 241
             P + A ++ N+A G + RA PQL +  +G P   + G+ +  +S+  +L  +
Sbjct: 189 VLPAITALLIVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMVIFWVSLGDILNQY 242