Pairwise Alignments

Query, 257 a.a., type III secretion system inner membrane R protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 260 a.a., flagellar biosynthetic protein FliR from Pseudomonas fluorescens FW300-N2C3

 Score = 78.2 bits (191), Expect = 2e-19
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 17/234 (7%)

Query: 16  FILALLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLATGAPPL----ERPAD 71
           FIL L R+ A +  +P FG   VP R++L   LA+T ++ P     G PP+         
Sbjct: 18  FILPLFRVTAVLMSMPVFGTTLVPRRVRLYFALAITVVIAP-----GLPPMPPVNALDLS 72

Query: 72  WVLAGGAEVVSGLFLGFTFRLMVFALQVAGTIAAQSTSLAQVFGGAVTPD---PQPALGN 128
            ++    +++ G  +GF+ +L   A  VAG I   S  +   F   V P        +G 
Sbjct: 73  ALMLVAEQILIGALMGFSLQLFFQAFVVAGQII--SIQMGMAFASMVDPTNGVTTAVIGQ 130

Query: 129 IFLMAGLALAALSGLHVHLTEAFLLSFLLLPVGNFPNSDIISAWAIA-DVSRMFVVGFTL 187
              M    L      H+ + E    SF  +PVG+     +   W IA  +  +      L
Sbjct: 131 FLTMLVTLLFLAMNGHLVVFEVLTESFTTMPVGS--AFLVNHFWEIAGKLGWVLGAAMVL 188

Query: 188 SAPFVAAAMLYNLALGAINRAMPQLMVAFVGAPALTLGGLALAALSVPFLLTHW 241
             P + A ++ N+A G + RA PQL +  +G P   + G+ +  +S+  +L  +
Sbjct: 189 VLPAITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMVIFWVSLGDILNQY 242