Pairwise Alignments

Query, 257 a.a., type III secretion system inner membrane R protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 256 a.a., flagellar biosynthesis protein FliR from Azospirillum brasilense Sp245

 Score =  104 bits (259), Expect = 2e-27
 Identities = 80/249 (32%), Positives = 131/249 (52%), Gaps = 9/249 (3%)

Query: 5   LAEIAGDVFPVFILALLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLATGAP 64
           L +  GD   +++L   R+G A + +P  G+  V  R +L+ ++A++ LV P +L    P
Sbjct: 4   LQQFLGDQIFLWLLVFARVGTAFSIMPTIGDAFVSTRTRLLFSVAVSVLVAP-VLGDRMP 62

Query: 65  PLERPAD--WVLAGGAEVVSGLFLGFTFRLMVFALQVAGTIAAQSTSL--AQVFGGAVTP 120
           P+       +VL  G EV  G+F+G   RL++ AL+VAGTI A  + L  AQ+F  A+  
Sbjct: 63  PMPDNIFRLFVLIAG-EVTVGIFMGTVARLLMGALEVAGTIIALQSGLSNAQMFNPAMAS 121

Query: 121 DPQPAL-GNIFLMAGLALAALSGLHVHLTEAFLLSFLLLPVGNFPNSDIISAWAIADVSR 179
             Q +L G +    GL L  ++ LH  L  A + S+     G     D ++      V +
Sbjct: 122 --QGSLPGALMGWLGLLLIFITNLHHLLIMAVVDSYSTFAPGAAIPIDDMANVVGQLVGK 179

Query: 180 MFVVGFTLSAPFVAAAMLYNLALGAINRAMPQLMVAFVGAPALTLGGLALAALSVPFLLT 239
            F++G  ++APF+ + ML+ LALG +N+  PQ+ V F+        GL + AL++  ++ 
Sbjct: 180 SFMLGVQMAAPFLISGMLFALALGLLNKLAPQIQVFFLFTSLQVALGLFMFALTLAAMMM 239

Query: 240 HWWYLFEAS 248
            W   FEA+
Sbjct: 240 FWLTHFEAA 248