Pairwise Alignments

Query, 257 a.a., type III secretion system inner membrane R protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 263 a.a., Flagellar biosynthesis protein FliR from Xanthomonas campestris pv. campestris strain 8004

 Score = 75.5 bits (184), Expect = 1e-18
 Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 29/225 (12%)

Query: 20  LLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLATGAPPLER----PADWVLA 75
           +LR GA +  +P  G RAVP R++++LT  L   + P L     PP+       A  VL+
Sbjct: 25  MLRTGALLTAMPLIGTRAVPGRVRVMLTGTLAMALAPIL-----PPVPEWDGFNATAVLS 79

Query: 76  GGAEVVSGLFLGFTFRLMVFALQVAGTIAAQSTSLAQVFGGAVTPDPQPALGN------I 129
              E+  G  +GF  RL+  A  +AG + +Q+T L+     A   DP   + +       
Sbjct: 80  IARELAVGASMGFMLRLIFEAGALAGELVSQATGLSF----AQMSDPLRGVTSGVIAQWF 135

Query: 130 FLMAGLALAALSGLHVHLTEAFLLSFLLLPVGNFPNSDIISAWAIADVSRMFVV-----G 184
           ++  GL   A +G H+ +    + S+  LP+G    + +  A A A+V+   ++     G
Sbjct: 136 YIGFGLLFFAANG-HLAVIALLVDSYKALPIG----TAVPDAAAFAEVAPTLLLQVLRGG 190

Query: 185 FTLSAPFVAAAMLYNLALGAINRAMPQLMVAFVGAPALTLGGLAL 229
            TL+ P + A +  NLA GA+ +A P L    +G P   L GL L
Sbjct: 191 LTLALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFL 235