Pairwise Alignments

Query, 257 a.a., type III secretion system inner membrane R protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 255 a.a., flagellar biosynthetic protein FliR from Rhodopseudomonas palustris CGA009

 Score =  112 bits (281), Expect = 6e-30
 Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 2/219 (0%)

Query: 16  FILALLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLATGAPPLERPADWVLA 75
           F+L   RIGA +  +P FGE  +P R+KL + L LT ++LP   +     +      ++ 
Sbjct: 15  FMLVFARIGAMVMLMPTFGESNIPTRVKLSIALLLTLIMLPLHRSAYQIDMSSLTPLLVL 74

Query: 76  GGAEVVSGLFLGFTFRLMVFALQVAGTIAAQSTSLAQVFGGAVTPDPQPAL-GNIFLMAG 134
              E+  G+ LG T R+ + ALQVAG + AQ   L  V     T   Q  + GN   M G
Sbjct: 75  MLQEIAVGIVLGATARVTLSALQVAGAVIAQQLGLGFVSAVDPTQGQQGVVVGNFLTMLG 134

Query: 135 LALAALSGLHVHLTEAFLLSFLLLPVGNFPNSDIISAWAIADVSRMFVVGFTLSAPFVAA 194
           + L   + +H  + +A   S+ +   G   ++  ++A A    +  F +G  LSAPF+  
Sbjct: 135 VTLLFATDMHYLVIQALSDSYKVFAPGELLHTGDVAALATKAFAAAFKLGLQLSAPFLVF 194

Query: 195 AMLYNLALGAINRAMPQLMVAFVGAP-ALTLGGLALAAL 232
            +++N+ LG + R MPQ+ V FVG P ++ +G + LA +
Sbjct: 195 GLVFNIGLGVLARLMPQMQVYFVGVPLSIVIGFIVLAVV 233