Pairwise Alignments

Query, 257 a.a., type III secretion system inner membrane R protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 259 a.a., flagellar biosynthetic protein FliR from Phaeobacter inhibens DSM 17395

 Score =  220 bits (560), Expect = 3e-62
 Identities = 113/224 (50%), Positives = 153/224 (68%), Gaps = 3/224 (1%)

Query: 18  LALLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLATGAPPLERPADWVLAGG 77
           +  LRIGA ++ LPAFGE+ VP RIKL ++LA T +V P L     PP   P  +     
Sbjct: 23  IVFLRIGAMVSVLPAFGEKYVPARIKLAISLAFTLIVAPALPIL--PPPASPLHYGSLAL 80

Query: 78  AEVVSGLFLGFTFRLMVFALQVAGTIAAQSTSLAQVFGGAVTPDPQPALGNIFLMAGLAL 137
           +E V GL LG   R+ V A+Q+AGTIAAQSTSLAQV GG +  +P PA+G + L++GLAL
Sbjct: 81  SEAVVGLALGMAIRMFVHAIQIAGTIAAQSTSLAQVLGG-IGAEPMPAIGAVLLISGLAL 139

Query: 138 AALSGLHVHLTEAFLLSFLLLPVGNFPNSDIISAWAIADVSRMFVVGFTLSAPFVAAAML 197
           A + GLH+ + E  + S+++ PVG FP++  +S W +  VSR F +GF+L+APF+  +M+
Sbjct: 140 AVMLGLHIRVAEFMIYSYMMFPVGEFPSASGLSDWGVHRVSRSFAMGFSLAAPFLIGSMV 199

Query: 198 YNLALGAINRAMPQLMVAFVGAPALTLGGLALAALSVPFLLTHW 241
           YNL LG INRAMP LMVAFVGAP +T GGLA+  ++ P +L  W
Sbjct: 200 YNLTLGVINRAMPALMVAFVGAPVVTFGGLAILMVASPMILDIW 243