Pairwise Alignments

Query, 571 a.a., acyl-CoA dehydrogenase domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 596 a.a., Acyl-CoA dehydrogenases from Pseudomonas stutzeri RCH2

 Score =  418 bits (1074), Expect = e-121
 Identities = 249/595 (41%), Positives = 337/595 (56%), Gaps = 29/595 (4%)

Query: 1   MPYTAPLNDLRFLLDHVVGFDAVQATDRFAETTP-DVTEAILTEAAKLCEGELAPLQRAG 59
           M Y APL D+RF+L  +  FDA    +        ++ + +L EAA+   GE+APL R  
Sbjct: 1   MEYKAPLRDMRFVLHEL--FDATAHCELLGNGLDRELIDGVLEEAARYTGGEIAPLNRNS 58

Query: 60  DLHPARLENGVVRTSPGFAEGYRAIAAGGWVGMSADPAYGGMGLPMALATCMNEMMSSAC 119
           D     LENG VRT  GF E YR     GW  M+    YGG G P  +A   +EM+  A 
Sbjct: 59  DEEGVTLENGEVRTPQGFVEAYRQYVDNGWASMTGPTEYGGQGFPQLVACNFHEMLMGAS 118

Query: 120 LSLQIAPMMTQGQIEALEAHASDALKALYLPRLTSGDWVGTMNLTEPQAGSDVGALTTKA 179
           LS +I   +T+G + AL  H SD LK  YL +L SG W GTM LTEPQAG+D+  L T+A
Sbjct: 119 LSFRIYSGLTEGAVLALYKHGSDELKNAYLEKLVSGSWSGTMCLTEPQAGTDLALLRTRA 178

Query: 180 VPKGDGTYAITGQKIYISWGDNDFTGNVCHLVLARLPDGAPGTKGISLFLVPRHLPDAAG 239
            P+ DG+Y ++G KI+IS G++D + N+ HLVLARLPD   G KGISL LVP+ + +A G
Sbjct: 179 EPQADGSYKVSGSKIFISGGEHDMSENIVHLVLARLPDAPAGVKGISLLLVPKFIANADG 238

Query: 240 NPGVANALKVVSLEHKLGLHGSPTAVMQYEGATGWLVGPEHGGMRAMFTMMNNARLGVGV 299
             G  NAL   ++EHK+G+ G+ T VM ++GATGW+VG  + G+  MFTMMN+AR  VG+
Sbjct: 239 TLGERNALSCGAVEHKMGIKGAATCVMNFDGATGWVVGAPNQGLACMFTMMNDARFQVGL 298

Query: 300 QGIGVAEAAYQHALAHARDRKQG------QTPVADADSILAHADVRRMVMTMRAEVFAAR 353
           QG+G+AE AYQ +LA+AR+R Q       Q P   AD I+ H DVRRM++T +  V  +R
Sbjct: 299 QGLGIAEQAYQGSLAYARERLQSRGLAGVQHPDKPADPIIVHPDVRRMLLTQKTLVEGSR 358

Query: 354 AIALSTAVATDMHHA----TGAESWAARAALLTPICKAYGTDTGIRVADLGLQVHGGMGV 409
            +A   A   D+ H     +  ++ + RAALL PI KA+ TD G  VA LG+QV+GG G 
Sbjct: 359 MLAAYCARQLDLEHGHPEPSHRKAASTRAALLIPIVKAFFTDMGQEVASLGVQVYGGHGY 418

Query: 410 IEETGAAQYLRDVRVTAIYEGTNGIQAMDLVGRK-LADGGEAMSRLLDEIEALAESA--R 466
           I E G  Q +RD R+T +YEGTNGIQA+D + RK L DGG  +S L  E   + +    R
Sbjct: 419 IREWGMEQLMRDSRITQLYEGTNGIQALDYIRRKLLGDGGAELSALQAEFSEICDRQIDR 478

Query: 467 GSLPELAEPVWQACETLRETTEALVAETRLNARFGGA--------QPYLMAAARVLGGHA 518
            +L ++A  V       RE T  ++A T  + +  GA          Y++ A   L    
Sbjct: 479 PALHDMASKVQARIGEWRELTAEIIAATGRDPQEIGAVSVDFLQYSAYVLLAGLWLQAAG 538

Query: 519 HLAAAIAEGGR-----GPRSALARFFVGRLLPEHGALAAQALAGDKDLYALDPED 568
               A+ +G         + A A F++ R+LP   A       G   L AL   D
Sbjct: 539 RAQDALEQGSAEEAFYQAKLASADFYLRRVLPRASAHREAIQGGAACLMALPESD 593