Pairwise Alignments

Query, 932 a.a., DNA polymerase I (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 927 a.a., DNA polymerase I (EC 2.7.7.7) from Xanthomonas campestris pv. campestris strain 8004

 Score =  704 bits (1817), Expect = 0.0
 Identities = 422/947 (44%), Positives = 580/947 (61%), Gaps = 46/947 (4%)

Query: 9   LHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEGNAGGDVTHVAVIFDK 68
           L LIDGS++++RA+HALPPLT  + G P GA+ G  NML+  ++        +VA + D 
Sbjct: 4   LVLIDGSSYLYRAFHALPPLTN-AQGEPTGALFGVVNMLRATLKERPA----YVAFVVDA 58

Query: 69  GSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEMEGFEADDIIATLACQ 128
              TFR+DLY  YKANR +MP+DLR Q+        A  I    ++G EADD+I TLA Q
Sbjct: 59  PGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQ 118

Query: 129 AREAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKTIDVD-GVFEKFGVGPDRVVDVQALA 187
               G   TI + DKD  QLV  GVE+++ M    +D D  V  KFGV P+++VD+ AL 
Sbjct: 119 GASDGLAVTISTGDKDFAQLVRPGVELVNTMSGSRMDSDEAVIAKFGVRPNQIVDLLALM 178

Query: 188 GDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAGEIKQPKRRQTLIEHRAQIELSKRL 247
           GD+VDNVPG    G KTAA  + EY SL+ ++  A +IK  K  + L     ++ L++ L
Sbjct: 179 GDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGENLRAALPRLPLNREL 237

Query: 248 VQLDCDMELDFTIEDLEVRDPEPETLLGFLAEMEFRTLTKRISGAL----GVEAP---AV 300
           V +  D+ L      L++R+P  E L    A   F    + + GA     G+ AP   A 
Sbjct: 238 VTIKTDVVLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAEAGGLTAPMAVAR 297

Query: 301 PEPA--------ATTASPEAEEHPPLSA-SEHVTIRDAETLQSWIDAIHARGVVAVDTET 351
            EP         +  A+   E  P LSA  ++ TI     L SWI  + A G  A DTET
Sbjct: 298 TEPGRARGTGFVSAPAAAPVELDPALSAPGQYETILTQAQLDSWIARLRAAGQFAFDTET 357

Query: 352 TGLNEMRADLVGVSLCVDPGRAAYLPLAHKDGGGADDLFGGEAKLAEGQLDFETALGMLK 411
             L+ ++A+L+G+S+  +PG+AAYLP  H   G            A  QLD   AL  L 
Sbjct: 358 DSLDALQANLIGLSVAAEPGQAAYLPFGHDFPG------------APAQLDRTQALAQLA 405

Query: 412 PVLEDPAVLKIGQNMKYDAKILARNGITVAPI-DDTMLLSYALHAGLHGHGMDALSERYL 470
           P+L DPAV K+GQ+ KYD  ++ R+GI +A   DDT+L S+ L++G   H MD+L++RYL
Sbjct: 406 PLLTDPAVRKLGQHGKYDLHVMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRYL 465

Query: 471 DHTPIPIKTLLGTGKSAITFDFVPIEEATKYAAEDAEITLRLWQRLKPRLHLAQVTR-VY 529
            +  +  + + G G   I F  V +E+AT+YAAEDA+ITLRL Q L  RL        VY
Sbjct: 466 GYDTVKYEDICGKGAKQIKFAQVSLEDATRYAAEDADITLRLHQVLGKRLAAEPALESVY 525

Query: 530 EWMERPMVPVLAEMEMRGIKVDRDTLSRMSNAFAQKMAGLEAEIHELAGESFNVGSPAQL 589
             +E P+V VL  +E  G+ VD   L R S   +++M   + +  ELAG +FN+ SP QL
Sbjct: 526 RDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQL 585

Query: 590 GEILFEKMGFEGGKTGKSGKYSTPADVLEDLATEHDLPRRVLDWRQLSKLKSTYTDALQD 649
             +LF+++          G+ ST  + LE +A +H+LPR +LD+R L+KL+STYTD L +
Sbjct: 586 QALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVILDYRSLAKLRSTYTDKLPE 645

Query: 650 HINPETGRVHTSYSIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEPGHVLVSLDY 709
            I+P++GRVHTSY  AGA TGRL+S+DPNLQNIP+R+E+GRRIR AFVA  G  L++ DY
Sbjct: 646 MIHPQSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDY 705

Query: 710 SQIELRILAHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINFGVIY 769
           SQIELRI+AH++G   L  AF  G D+H  TA+E+F   +D ++ + RR AKAINFG++Y
Sbjct: 706 SQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMY 765

Query: 770 GISGFGLARNLRIPRAEAQAFIDTYFERFPGIRAYMDDTVAFAKEHKYVQTLFGRKIHTP 829
           G+S FGLAR L I R EAQ +I  YF R+PG+R +M+ T   A++  YV+T+FGR+++  
Sbjct: 766 GMSAFGLARQLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLD 825

Query: 830 EI--GAKGPQAGFAKRAAINAPIQGTAADIIRRAMVRMPAAIADLPAR--MLLQVHDELI 885
            I  G++G +AG A+RAAINAP+QGTAADII+RAMV +   IAD   R  M+LQVHDEL+
Sbjct: 826 FINAGSQGQRAG-AERAAINAPMQGTAADIIKRAMVSVDGWIADHAQRALMILQVHDELV 884

Query: 886 FEVEEDAVDRVIPAVRQVMEGAAAPVVHLDVPLTVDAGQGRSWAEAH 932
           FE + D VD ++  V   M  AA+    L VPL VD+G G +W EAH
Sbjct: 885 FEADADFVDTLLAEVTARMSAAAS----LRVPLVVDSGVGDNWDEAH 927