Pairwise Alignments

Query, 932 a.a., DNA polymerase I (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 1025 a.a., DNA polymerase I from Rhodopseudomonas palustris CGA009

 Score =  954 bits (2467), Expect = 0.0
 Identities = 528/999 (52%), Positives = 664/999 (66%), Gaps = 72/999 (7%)

Query: 4    GKGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEGNAGGD-VTHV 62
            GKG H+ L+DGS++IFRAYHALPPL RKSDGL V AV GFCNML + +      +  TH+
Sbjct: 29   GKGDHIFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPPENRPTHL 88

Query: 63   AVIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEMEGFEADDII 122
            A+IFDK   TFRN LY +YKA+R   PEDL PQ  L R A  AF++ C E  GFEADD+I
Sbjct: 89   AIIFDKSEVTFRNHLYPEYKAHRPPAPEDLIPQFALIREAVRAFDLPCLEQSGFEADDLI 148

Query: 123  ATLACQAREAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKTIDVDGVFEKFGVGPDRVVD 182
            AT   +A EAG   TI+SSDKDLMQLV   V M D MK++ I V  V EKFGV P++VV+
Sbjct: 149  ATYVREACEAGATATIVSSDKDLMQLVTDCVVMYDTMKDRRIGVPEVIEKFGVPPNKVVE 208

Query: 183  VQALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAGEIKQPKRRQTLIEHRAQIE 242
            VQALAGDSVDNVPG PGIGIKTAA LINEYG LE LL RA EIKQPKRR+ LIE+  +  
Sbjct: 209  VQALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPEIKQPKRREALIENAEKAR 268

Query: 243  LSKRLVQLDCDMELDFTIEDLEVRDPEPETLLGFL--------------------AEMEF 282
            +S++LV LD  ++L+  +E+L V +P+   L+ FL                    +++E 
Sbjct: 269  ISRKLVLLDDHVQLEVPLEELAVHEPDARKLVAFLKAMEFTTLTRRVADYAQIDPSDVEA 328

Query: 283  RTLTKRI----------SGAL--GVEAPAVPEPAA------------------------- 305
             T  K            SG L  G E    P PA+                         
Sbjct: 329  ETALKSAVPPLAKSAAASGDLFAGQEPSPQPSPASGGGSALASGQGGPLNAGRGRDGRPG 388

Query: 306  --------TTASPEAEEHPPLSASEHVTIRDAETLQSWIDAIHARGVVAVDTETTGLNEM 357
                      A  EA    P+  + + T+R  + L  +I  IH  G+VA++T  T ++ M
Sbjct: 389  VVLSPEALVAARAEAARKIPVDRTAYKTLRSLDELHGFIARIHDTGIVALETVATSIDPM 448

Query: 358  RADLVGVSLCVDPGRAAYLPLAHKDGGGADDLFGGEAKLAEGQLDFETALGMLKPVLEDP 417
            +A+L+G++L + P  A Y+PL HK  G  D LF   A LA  Q+    AL  LKP+LE  
Sbjct: 449  QAELIGLALALGPNDACYIPLLHKQSGDGDGLFA--AGLAPDQIGPRDALDALKPILESA 506

Query: 418  AVLKIGQNMKYDAKILARNGITVAPIDDTMLLSYALHAGLHGHGMDALSERYLDHTPIPI 477
             V K+G  +K+ A +LA++G+T+  IDD  L+SYAL AG   H +DALSE  L HT   +
Sbjct: 507  GVAKVGFAIKFAAVLLAQHGLTLRNIDDPQLMSYALDAGRGSHALDALSESNLGHTLHTL 566

Query: 478  KTLLGTGKSAITFDFVPIEEATKYAAEDAEITLRLWQRLKPRLHLAQVTRVYEWMERPMV 537
              L GTGK+ I FD VP++ AT YAAE A+++LRL + LKPRL    +T VYE +ERP+V
Sbjct: 567  TELTGTGKNKIGFDQVPVDRATAYAAERADVSLRLARVLKPRLVAGSMTAVYETLERPLV 626

Query: 538  PVLAEMEMRGIKVDRDTLSRMSNAFAQKMAGLEAEIHELAGESFNVGSPAQLGEILFEKM 597
             VLA ME RGI +DR  LSR+S  FAQ  A +EAEI ELAGE  N+GSP QLG+ILF KM
Sbjct: 627  GVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAGEDINIGSPKQLGDILFGKM 686

Query: 598  GFEGGKTGKSGKYSTPADVLEDLATE-HDLPRRVLDWRQLSKLKSTYTDALQDHINPETG 656
            G  GG   K+G +ST A VL++LA + H+ PR++LDWRQ+SKL+STYTDAL ++++P+T 
Sbjct: 687  GLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPNYVHPQTH 746

Query: 657  RVHTSYSIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEPGHVLVSLDYSQIELRI 716
            RVHT+Y++A   TGRL+S +PNLQNIPVR+E+GR+IR AFVA PG+ LVS DYSQIELR+
Sbjct: 747  RVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGNKLVSADYSQIELRL 806

Query: 717  LAHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINFGVIYGISGFGL 776
            L+ +A + AL+ AF+DG+DIHAMTASEMF VP++ M  E+RR+AKAINFG+IYGIS FGL
Sbjct: 807  LSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGL 866

Query: 777  ARNLRIPRAEAQAFIDTYFERFPGIRAYMDDTVAFAKEHKYVQTLFGRKIHTPEIGAKGP 836
            A  L IPR EA A+I  YFERFPGIRAYMD+T  F + H YV TLFGRK H P+I A  P
Sbjct: 867  ANQLSIPREEAGAYIKRYFERFPGIRAYMDETRDFCRNHGYVTTLFGRKCHYPDIKASNP 926

Query: 837  Q-AGFAKRAAINAPIQGTAADIIRRAMVRMPAAIAD--LPARMLLQVHDELIFEVEEDAV 893
                F +RAAINA +QG+AADIIRRAMVRM  A+A+  L A+MLLQVHDELIFEV E  V
Sbjct: 927  SIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEVPEAEV 986

Query: 894  DRVIPAVRQVMEGAAAPVVHLDVPLTVDAGQGRSWAEAH 932
            +  +P VR VM+ A  P V L+VPL VDA    +W EAH
Sbjct: 987  EATLPVVRAVMQDAPFPAVILNVPLQVDARAADNWDEAH 1025