Pairwise Alignments

Query, 932 a.a., DNA polymerase I (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 921 a.a., DNA polymerase I (EC 2.7.7.7) from Sphingomonas koreensis DSMZ 15582

 Score =  897 bits (2319), Expect = 0.0
 Identities = 489/938 (52%), Positives = 634/938 (67%), Gaps = 32/938 (3%)

Query: 8   HLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEGNAGGD-VTHVAVIF 66
           HL+L+DGS +IFRAYH LPPLT K  G PVGAV G+  ML +  +     D  TH+AVI 
Sbjct: 3   HLYLVDGSGYIFRAYHRLPPLTNKH-GEPVGAVYGYTTMLWKLADELHKADGPTHMAVIL 61

Query: 67  DKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEMEGFEADDIIATLA 126
           DK  HTFRN++YDQYKA+R   PEDL PQ P+ R AT AF++ C E  G+EADD+IA+  
Sbjct: 62  DKSEHTFRNEMYDQYKAHRPPAPEDLVPQFPMIRDATRAFSLPCIEEAGWEADDLIASYT 121

Query: 127 CQAREAGGRCTIISSDKDLMQLVGG-GVEMLDAMKNKTIDVDGVFEKFGVGPDRVVDVQA 185
             A   G + TI+SSDKDLMQL+    V+MLD M N+ +      EKFGV P+++ +V A
Sbjct: 122 KAALAQGWQVTIVSSDKDLMQLMTDPSVDMLDTMNNRRLGPKDTEEKFGVLPEKLGEVLA 181

Query: 186 LAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAGEIKQPKRRQTLIEHRAQIELSK 245
           L GDSVDNVPG  GIG KTAA LI E+G+++ +L+ A  +K  K R  LIE+     LS+
Sbjct: 182 LMGDSVDNVPGVKGIGPKTAAKLIQEFGTVDAVLEAAPSMKPSKMRDNLIEYADMARLSR 241

Query: 246 RLVQLDCDMELDFTIEDLEVRDPEPETLLGFLAEMEFRTLTKRISGALGV-EAP-AVPEP 303
           +LV+L  D+ L   +++LE++      L  FL    F+TL  R+ G   V +AP A PEP
Sbjct: 242 KLVELASDVPLPDPLDELELKGIPDAPLRAFLEHHGFKTLLSRLGGGASVADAPVASPEP 301

Query: 304 AATTASPEAEEHPPLSASEHVTIRDAETLQSWIDAIHARGVVAVDTETTGLNEMRADLVG 363
                     + PP     + T+ D   L+ WI A   +G VA+DTETTG++  RA+LVG
Sbjct: 302 VPMP------DDPPCDHDGYETVVDEAALERWILAAKHQGWVAIDTETTGVDATRAELVG 355

Query: 364 VSLCVDPGRAAYLPLAHKDGGGADDLFGGEAKLAEGQLDFETALGMLKPVLEDPAVLKIG 423
           VS+ ++P RA Y+P+ H    G  D+F  +      QLD    +  LKP+LEDP+VLKIG
Sbjct: 356 VSMALEPNRACYIPVGH----GGTDMFAEKPV----QLDRNLVIAKLKPLLEDPSVLKIG 407

Query: 424 QNMKYDAKILARNGITVAPIDDTMLLSYALHAGLHGHGMDALSERYLDHTPIPIKTLLGT 483
            N+KYD  +L+R GI VAP DDT+++S+ L AGLHGHGMD L+  +L HT I  K ++G+
Sbjct: 408 HNIKYDLIVLSRAGIDVAPYDDTIVMSFDLDAGLHGHGMDELAATHLSHTCIAYKDVVGS 467

Query: 484 GKSAITFDFVPIEEATKYAAEDAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEM 543
           GK  + F  V ++ AT+YAAEDA++TLRLW+RLKPRL     TRVYE ++RP+  V+A+M
Sbjct: 468 GKKQLGFQEVDLKAATRYAAEDADVTLRLWRRLKPRLPFEGSTRVYEMVDRPLARVIADM 527

Query: 544 EMRGIKVDRDTLSRMSNAFAQKMAGLEAEIHELAGESFNVGSPAQLGEILFEKMGFEGGK 603
           E+ G+KVD   L+++S+ F++++A LE EIH +AG  F +GSP QLG++LF+KMG +GG+
Sbjct: 528 ELAGVKVDAGVLAKLSDDFSRQIAALEEEIHGIAGFKFTIGSPKQLGDVLFDKMGIKGGR 587

Query: 604 TGKSGKYSTPADVLEDLATEHDLPRR-----VLDWRQLSKLKSTYTDALQDHINPETGRV 658
            GKSG YST  + LE +A + D P R     VLDWRQL+KLKSTYTDALQ  INP TGRV
Sbjct: 588 KGKSGVYSTDVNELERIAADKDSPGREMVLKVLDWRQLTKLKSTYTDALQAQINPATGRV 647

Query: 659 HTSYSIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEPGHVLVSLDYSQIELRILA 718
           HTSYS+ GA TGRL+STDPNLQNIPVR+E GR+IR+AFVAEPG+V++S DYSQIELR+ A
Sbjct: 648 HTSYSLTGAQTGRLSSTDPNLQNIPVRTEVGRQIRDAFVAEPGNVILSADYSQIELRLAA 707

Query: 719 HIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINFGVIYGISGFGLAR 778
           HIA +  L+ AF  G DIH MTA+E+F     E+  + R +AK INF ++YGIS +GLA 
Sbjct: 708 HIADVPQLREAFERGDDIHNMTATELF----GEVNRDTRGRAKTINFAILYGISRWGLAG 763

Query: 779 NLRIPRAEAQAFIDTYFERFPGIRAYMDDTVAFAKEHKYVQTLFGRKIHTPEI-GAKGPQ 837
            L +   EAQA ID YFERFPGI  Y+ DT+  AK   Y QTLFGRK H P +  A   +
Sbjct: 764 RLDVTPDEAQAMIDRYFERFPGISRYIADTLNDAKARGYTQTLFGRKTHFPRLKSATQHE 823

Query: 838 AGFAKRAAINAPIQGTAADIIRRAMVRMPAAIADL---PARMLLQVHDELIFEVEEDAVD 894
              ++RAAINAPIQGT+ADII+RAM RM  A+ D      RML+QVHDEL+FE+    V+
Sbjct: 824 RAGSERAAINAPIQGTSADIIKRAMARMGPALRDAGLENVRMLMQVHDELVFELPAGDVE 883

Query: 895 RVIPAVRQVMEGAAAPVVHLDVPLTVDAGQGRSWAEAH 932
              P +R VME AA P V L VPL V+ G G SW  AH
Sbjct: 884 AATPVIRGVMESAAEPAVTLSVPLGVEIGTGPSWGAAH 921