Pairwise Alignments

Query, 932 a.a., DNA polymerase I (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 963 a.a., DNA polymerase I from Caulobacter crescentus NA1000

 Score = 1040 bits (2689), Expect = 0.0
 Identities = 546/948 (57%), Positives = 667/948 (70%), Gaps = 22/948 (2%)

Query: 4   GKGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEGNAGGDVTHVA 63
           G    L L+DGSA++FRAYHALPPLTRKSDGLPVGAV GFCNML + +    G   TH+A
Sbjct: 19  GPAVRLFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLLRDMQGDTPTHLA 78

Query: 64  VIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEMEGFEADDIIA 123
           VI+D    TFRN LYDQYKA+R   PEDL PQ PL R AT AF +   E+ G+EADD+IA
Sbjct: 79  VIWDHSEKTFRNALYDQYKAHRPPPPEDLIPQFPLVREATLAFGVPAIELPGYEADDLIA 138

Query: 124 TLACQAREAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKTIDVDGVFEKFGVGPDRVVDV 183
             AC+AR+ GG   I+SSDKDLMQLVG GV M D MK   I+ + VFEKFGV P++VVDV
Sbjct: 139 AYACKARDIGGEAIIVSSDKDLMQLVGDGVSMYDPMKGVRIEREQVFEKFGVYPEKVVDV 198

Query: 184 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAGEIKQPKRRQTLIEHRAQIEL 243
           QAL GDSVDNVPGAPGIGIKTAA LI EYG L+ LL RAGEIKQPKRR+TLI    QI L
Sbjct: 199 QALCGDSVDNVPGAPGIGIKTAAQLITEYGDLDTLLARAGEIKQPKRRETLINFADQIRL 258

Query: 244 SKRLVQLDCDMELDFTIEDLEVRDPEPETLLGFLAEMEFRTLTKRISGALGVEAPA-VPE 302
           S+ LV+LDCD  L   ++ L VR+P+ E L  FL +MEFR+L +R+        P  +  
Sbjct: 259 SRALVKLDCDTPLPQPLDALTVREPDKEALAAFLEQMEFRSLARRVGDGSAAATPGTLDR 318

Query: 303 PAATTASP-----------EAEEHP----PLSASEHVTIRDAETLQSWIDAIHARGVVAV 347
           PAA   +P            A  HP     +  + +  +RD  TL++W+     +G+VA 
Sbjct: 319 PAAPPKAPVVSVSYMGAAARAAAHPVEPVKIDHAAYACVRDLATLKAWVAKATDKGLVAF 378

Query: 348 DTETTGLNEMRADLVGVSLCVDPGRAAYLPLAHKDGGGADDLFGGEAKLAEGQLDFETAL 407
           DTET  L+   A L GVSL + PG A Y+P++H +     D    EA     Q+     +
Sbjct: 379 DTETDALSSATAGLCGVSLAIAPGEACYIPISHCEKA---DGLAFEAPADIEQIPLADVI 435

Query: 408 GMLKPVLEDPAVLKIGQNMKYDAKILARNGITVAPIDDTMLLSYALHAGLHGHGMDALSE 467
             LKP+LEDPAVLK+ QN KYD  +LAR+GI VAPI+DTML+SY L AGLHGHGMD LSE
Sbjct: 436 ATLKPLLEDPAVLKVAQNAKYDIAVLARHGIQVAPIEDTMLISYVLEAGLHGHGMDELSE 495

Query: 468 RYLDHTPIPIKTLLGTGKSAITFDFVPIEEATKYAAEDAEITLRLWQRLKPRLHLAQVTR 527
            +L H PIP K + G+GK  I+F  V + EAT YAAEDA++TLRL+  LKP+L  A ++ 
Sbjct: 496 LHLGHKPIPFKQVAGSGKGQISFKHVALPEATAYAAEDADVTLRLYHHLKPQLARASLST 555

Query: 528 VYEWMERPMVPVLAEMEMRGIKVDRDTLSRMSNAFAQKMAGLEAEIHELAGESFNVGSPA 587
           VYE +ERPM  VLA ME  G++VD + L  +SN F+ +MA  EA   EL G  FN+GSP 
Sbjct: 556 VYETLERPMPAVLAMMENNGVRVDPEALRLLSNEFSLRMAQFEARAQELVGRPFNLGSPK 615

Query: 588 QLGEILFEKMGFEGGKTGKSGKYSTPADVLEDLATEHDLPRRVLDWRQLSKLKSTYTDAL 647
           Q+G++LF +M  +GGK   +G++ST +DVLE LA EH+LPR +LDWRQLSKLK TYT+ L
Sbjct: 616 QIGDVLFGEMQMKGGKKTATGQWSTDSDVLESLALEHELPRVLLDWRQLSKLKGTYTENL 675

Query: 648 QDHINPETGRVHTSYSIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEPGHVLVSL 707
              I P TGRVHTSY++A   TGRL+S+DPNLQNIPVR+EEGR+IR+AFVA PGHVL+S 
Sbjct: 676 IAAIAPSTGRVHTSYALAATTTGRLSSSDPNLQNIPVRTEEGRKIRKAFVAAPGHVLISA 735

Query: 708 DYSQIELRILAHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINFGV 767
           DYSQIELR+LAHI  I  LK AF++GLDIHAMTASEMFD P++ M P +RR+AKAINFG+
Sbjct: 736 DYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAINFGI 795

Query: 768 IYGISGFGLARNLRIPRAEAQAFIDTYFERFPGIRAYMDDTVAFAKEHKYVQTLFGRKIH 827
           +YGIS FGLA  L I + EA A+I TYFERFPGI+AYMD T AF +EH YV T+FGRKI+
Sbjct: 796 VYGISAFGLANQLGISQGEAGAYIKTYFERFPGIQAYMDATKAFVREHGYVTTIFGRKIN 855

Query: 828 TPEIGAK-GPQAGFAKRAAINAPIQGTAADIIRRAMVRMPAAI--ADLPARMLLQVHDEL 884
            P+I AK      FA+RAAINAPIQG AAD++RRAM+RMP A+  A L  RMLLQVHDEL
Sbjct: 856 IPDIEAKSAAHRQFAERAAINAPIQGAAADVMRRAMIRMPVALEAAGLSTRMLLQVHDEL 915

Query: 885 IFEVEEDAVDRVIPAVRQVMEGAAAPVVHLDVPLTVDAGQGRSWAEAH 932
           +FE  E   +R    VR VME AA P V L +PLTV+A    +W EAH
Sbjct: 916 VFEAPEAEAERACAVVRAVMEKAAEPAVALSIPLTVEARAASNWDEAH 963