Pairwise Alignments

Query, 346 a.a., diguanylate cyclase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 876 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  103 bits (258), Expect = 1e-26
 Identities = 69/177 (38%), Positives = 96/177 (54%), Gaps = 8/177 (4%)

Query: 159 RLQEAKTVAESRALTDTLTGLHNRRAMDLTFEQLLANPPR---DGFGLMLIDLDYFKSVN 215
           R  EAK V +++   D LTGL NR          + +  R   + F L+ IDLD FK +N
Sbjct: 442 RNMEAKLVHDAKH--DALTGLPNRAMFMERLNHAIKHVRRHSLEQFALLFIDLDRFKLIN 499

Query: 216 DTLGHAAGDMVLLEVARILREETRSEDFSFRVGGDEFVLVLRNCNDLGLMTRVADRIIAR 275
           DT+GH  GD  L+E A  LR   RS D   R+GGDEFV++L   ND+     VA+R+I +
Sbjct: 500 DTMGHLEGDRFLIETATRLRSCIRSNDTLARLGGDEFVILLDTINDMNDARDVAERVIRK 559

Query: 276 LEEPFYYDGKPCRISASIGITIS-EFYDPVEIDKMLSDADEATYASKNRGRAQHTIY 331
           + + +++        ASIGITIS    D  E   ML +AD A Y +K  G+  + I+
Sbjct: 560 ISQSYHFGTIEFHSGASIGITISGNKLDTSE--SMLRNADTAMYQAKANGKGCYVIF 614