Pairwise Alignments

Query, 212 a.a., N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 274 a.a., N-acetylmuramoyl-L-alanine amidase from Pantoea sp. MT58

 Score =  132 bits (331), Expect = 8e-36
 Identities = 87/232 (37%), Positives = 115/232 (49%), Gaps = 34/232 (14%)

Query: 3   RLVVLHYTAMADAQGAADWLCAPRAQVSAHYVIGRD-------GAVMRLVPEHLRAWHAG 55
           +++V+HYTA   +   A        +VS HY+I R        G V +LVPE   AWHAG
Sbjct: 42  KVIVIHYTAEDFSSSLAT---LTDREVSVHYLIPRQPPQRAGKGIVWQLVPEQQLAWHAG 98

Query: 56  AGAWGGCTDVNSASIGIELDNDGT---------SPFSAPLMDALEGLLGDILTRHGIPRK 106
              W G + +N  SIGIEL N G           PF+A  +  LE L+ DI  R+GIP +
Sbjct: 99  PSFWRGASRINDTSIGIELVNRGYRRTLTGLEWQPFTAAQIITLEALVRDIAQRYGIPPE 158

Query: 107 GVIGHSDLAPGRKIDPGPRFDWRRLARRGLSIWPEGAAAG---AAPDP------ARFAAD 157
            ++GHSD+AP RK DPGP F W +LA+RGL  WP+        A  DP           +
Sbjct: 159 NIVGHSDIAPQRKQDPGPLFPWHQLAQRGLGAWPDAGRVQFYLAGQDPHAQVPVQPLMEN 218

Query: 158 LARFGMTAEVDAETR-----LAAFRARFRPG-ATGPLAPEDMGLAADLAARW 203
           L RFG  A  +   R     +AAF+  FRP    G    E   +AA L  ++
Sbjct: 219 LQRFGYAATAEMSAREQQKVIAAFQMHFRPADYRGQPDAETAAIAAALLEKY 270