Pairwise Alignments

Query, 212 a.a., N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 181 a.a., AmpD protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.0 bits (214), Expect = 2e-22
 Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 1/104 (0%)

Query: 28  QVSAHYVIGRDGAVMRLVPEHLRAWHAGAGAWGGCTDVNSASIGIELDNDGTSPFSAPLM 87
           +VSAH++I RDG  ++ V    RAWHAG   +G   + N  SIGIEL+   T P++A   
Sbjct: 70  KVSAHFLIRRDGECVQYVSCDDRAWHAGVSRYGERENCNDFSIGIELEGTDTEPYTAAQY 129

Query: 88  DALEGLLGDILTRH-GIPRKGVIGHSDLAPGRKIDPGPRFDWRR 130
             L  L   +L ++  +  + ++GH D+AP RK DPGP FDW R
Sbjct: 130 QQLVELTQALLAQYSSLSAERIVGHCDIAPVRKTDPGPSFDWER 173