Pairwise Alignments

Query, 530 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 903 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score =  258 bits (658), Expect = 9e-73
 Identities = 184/517 (35%), Positives = 261/517 (50%), Gaps = 26/517 (5%)

Query: 23  KAPVLMHSVDRDGVIVAISAYWAARLGYSPDDMIGRSIMEFMVPESANRARTE------- 75
           +A   + + D  G I   +      LGY  +D+IGR+            AR E       
Sbjct: 258 RAAYAVIATDVTGTITLFNPAAERMLGYKAEDLIGRASAMLFHDSDELAARAEAMRKEGI 317

Query: 76  -------VMPTLLRTSSVDKIRHTFLRQDGTPFHALVSAVVLRDADGAFLRTLSIVSADD 128
                  V+   L  +  D    T++   G      ++   LR   G  L  L I  A D
Sbjct: 318 SVSSNLGVLQARLARNDPDTAMWTYIDAMGNRIPTRLTLSRLRTKTGVNLGVLGI--AVD 375

Query: 129 GTDGL--QQDLQAALIRAEDASRAKSRFLAAMSHEIRTPMNAILGFAQL-LRLSDLDEKR 185
            T+ L  + +L+AA   AE AS AK+ FLA MSHEIRTP+N I+G+A L L    L    
Sbjct: 376 LTEQLKYEDELKAARASAEQASAAKADFLANMSHEIRTPLNGIIGYADLVLEDETLAPDT 435

Query: 186 RGHVDAIIAAGGQLMNLLTDLLDLSHMETGRMRIESRATDLMPLLDQVADWWYSSVSEKG 245
           R  V  I  A   L  ++ D+LD S +E   + +ES+   +  L+   A        EKG
Sbjct: 436 RRQVMRIFEASDSLRVIIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKG 495

Query: 246 LTLQVEIDDRMPARVLTDPVRLQQVLNNFMANALRYTDRGTITLRVREISRSDSFSRLRL 305
           L L +      P  ++ D  RL+QVL N M NA+++T  G++ L V  I R D   RLR+
Sbjct: 496 LKL-IATAQATPPVLIGDAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLVRLRI 554

Query: 306 EVEDTGIGISEEQQALLFRPFVQIESDFGKDRGGWGLGLSICHNIAAAMSADIGVTSQPG 365
            V DTGIGIS E Q  LF+ F Q +    +  GG GLGL+I   I  AM  ++ + SQPG
Sbjct: 555 SVADTGIGISPEAQKGLFKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKIDSQPG 614

Query: 366 AGATFHFELTLPL-EPCPEPRETPQPHPARAPRGPSAKVLVAEDNPLNQNVMEAMLRDLG 424
            G+TF+FE+ LP+ E     R   Q H +R     S K+LV +D  +N+++ + ML   G
Sbjct: 615 VGSTFYFEVELPVAERLDIERLDAQVHCSR-----SVKILVVDDVEMNRDLCKTMLTRAG 669

Query: 425 HEVRVVSNGFEAVEAILSESFDLVLMDITMPGLDGLGATAQIRTSGPEKSKVPIIACTAH 484
           H+V +  +G  A+  + S ++DLV MD+ M  +DGL AT +IR  G     VPIIA TA+
Sbjct: 670 HDVDLADSGATAIAMVASRTYDLVFMDVQMGEMDGLEATRRIRALGHAYRDVPIIALTAN 729

Query: 485 VGGDVQARYRDAGIDGFLPKPVDPRALEAAINSAVSG 521
           V  +   RY+ AG+DG L KP++   L A +   + G
Sbjct: 730 VLPEQVERYKAAGVDGHLGKPINRAELLACVARWIDG 766



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 34  DGVIVAISAYWAARLGYSPDDMIGRSIMEFMVPESANRARTEVMPTLLRTSSVDKIRHTF 93
           DG +++ +       GY+ +  IG++  E MVP+       +++  +   ++   +    
Sbjct: 124 DGTVLSWNKTAERLFGYTAEQAIGQNATELMVPDDLRDEEQQMLSGISDGTAFAYLWTKR 183

Query: 94  LRQDGTPFHALVSAVVLRDADGAFLRTLSIVSADDGTDGLQ-----QDLQAALIR 143
            R +GT     VS   +R  DG  +   +  S  D TD +Q      DL AAL R
Sbjct: 184 KRANGTLVDVAVSISPIRADDGRLIGMAA--SMRDITDLVQAEREVHDLNAALER 236