Pairwise Alignments

Query, 530 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 1358 a.a., PAS domain-containing protein from Dyella japonica UNC79MFTsu3.2

 Score =  238 bits (607), Expect = 1e-66
 Identities = 154/422 (36%), Positives = 219/422 (51%), Gaps = 10/422 (2%)

Query: 102  HALVSAVVLRDADGAFLRTLSIVSADDGTDGLQQDLQAALIRAEDASRAKSRFLAAMSHE 161
            H    A + R ADGA LR + +           + L  A   AE A RAKS FLA MSHE
Sbjct: 639  HLRAQAQIFRAADGAPLRAIGVNRDITDERRAAEVLLHAKEAAESAERAKSDFLAVMSHE 698

Query: 162  IRTPMNAILGFAQLLRLSDLDEKRRGHVDAIIAAGGQLMNLLTDLLDLSHMETGRMRIES 221
            IRTPMN +LG ++L   ++L  K+R ++  + A+   L+ ++ ++LD S +E G + +E+
Sbjct: 699  IRTPMNTVLGMSRLALQTELAPKQRNYLGKVHASAENLLTIINNVLDYSKIEAGGLALEA 758

Query: 222  RATDLMPLLDQVADWWYSSVSEKGLTLQVEIDDRMPARVLTDPVRLQQVLNNFMANALRY 281
                L  +LD VA        EKGL +       +P  ++ D  RL QVL N ++NA+++
Sbjct: 759  ADFTLSSVLDAVAAVTAMKAEEKGLEIAYTTTAGVPEHLVGDAFRLGQVLINLVSNAVKF 818

Query: 282  TDRGTITLRVREISRSD-SFSRLRLEVEDTGIGISEEQQALLFRPFVQIESDFGKDRGGW 340
            T RG + + V  + + D   SRLR EV DTGIG+   Q   LF+ F Q ES   +  GG 
Sbjct: 819  TARGEVIVSVCLVDKLDGQRSRLRFEVRDTGIGLDAWQADRLFQAFNQAESATSRKYGGT 878

Query: 341  GLGLSICHNIAAAMSADIGVTSQPGAGATFHFELTLPLEPCPEPRETPQPHPARAPRGPS 400
            GLGL IC  +   M   IGV S+PG GATFHF + + +    E     QP   R P    
Sbjct: 879  GLGLVICRRLVELMGGSIGVRSKPGEGATFHFTIDVGVRQGLE----AQPFAGRQPGLAG 934

Query: 401  AKVLVAEDNPLNQNVMEAMLRDLGHEVRVVSNGFEAVEAILS-----ESFDLVLMDITMP 455
             +VLV +DN   +++   MLR     V   ++G EA+EA+ +      +FDLVLMD  MP
Sbjct: 935  KRVLVTDDNASARSIFARMLRQFRMNVTTAASGQEAIEALKNAARDQRAFDLVLMDWRMP 994

Query: 456  GLDGLGATAQIRTSGPEKSKVPIIACTAHVGGDVQARYRDAGIDGFLPKPVDPRALEAAI 515
            GLDGL    +IR     +    ++  TA+   +V  +     +DG L KPV    L   +
Sbjct: 995  GLDGLEVARRIRADHELQQTPAVLMVTAYGREEVIHQVEQLQLDGLLIKPVTESTLLETV 1054

Query: 516  NS 517
             S
Sbjct: 1055 ES 1056



 Score = 66.6 bits (161), Expect = 6e-15
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 1/106 (0%)

Query: 402  KVLVAEDNPLNQNVMEAMLRDLGHEVRVVSNGFEAVEAILSESFDLVLMDITMPGLDGLG 461
            +VLV +D+ LN+ V    L   G  V V  +G  A+  + S+ +D +L+DI MPG+DGL 
Sbjct: 1091 RVLVVDDHALNREVASEFLLAAGLAVDVAPDGESALSRLASQHYDAMLLDIHMPGMDGLA 1150

Query: 462  ATAQIRTSGPEKSKVPIIACTAHVGGDVQARYRDAGIDGFLPKPVD 507
               +IR      + +PIIA TA      +A   +AG++  L KP+D
Sbjct: 1151 TAREIRRHA-RWAHLPIIALTALARPQDRAASMEAGMNAHLTKPLD 1195



 Score = 33.1 bits (74), Expect = 7e-05
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 12/134 (8%)

Query: 25  PVLMHSVDRDGVIVAISAYWAARLGYSPDDMIGRSIMEFMVPESANRARTEVMPTLLRTS 84
           P L++  D  G  V ++      +G + DD+IGR   E   P+ AN A  +    +L+T 
Sbjct: 303 PDLVYVKDCAGRYVLVNPAVEQVMGRTADDIIGRLDTEIFPPDIAN-ALVQNDRQVLQTD 361

Query: 85  SVDKIRHTFLRQDGTPFHALVSAVVLRDADGAFLRTLSIVSADDGTDGLQQDLQAALIRA 144
               I  T +  DG P     +   LRD++G  +          G  G+ +D   A +  
Sbjct: 362 RPYSIEETAV-VDGNPRTYASTKAPLRDSEGRLI----------GLLGISRDQTEAKLAE 410

Query: 145 EDASRAKSRFLAAM 158
            +  R+++R+  A+
Sbjct: 411 LELRRSEARWQFAL 424



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 19/148 (12%)

Query: 48  LGYSPDDMIGRSIMEFMVPESANRARTEVMPTLLRTSSVDKIRHTFL--RQDGTPFHA-- 103
           L  + D+ IGR+I EF+ P        E+    +R   + +I+  F   R DG+  H   
Sbjct: 55  LSCTRDECIGRAIDEFISPADREHFLGEL--DAMRRGDIKQIQTAFRHPRHDGSVLHGKL 112

Query: 104 LVSAVVLRDADGAFLRTLSIVSADDGTDGLQQDLQAALIRAEDASRAKSRFLAAMSH--- 160
            +S +    A   +   LS +SA       QQ  + AL   E+A R  ++ L+       
Sbjct: 113 KISRLGKAAAGAGYFIQLSDISA-------QQQAELAL---EEAQRRWNQTLSGSRQVVW 162

Query: 161 EIRTPMNAILGFAQLLRLSDLDEKRRGH 188
           +   P   +   +Q   + DL ++   H
Sbjct: 163 DFHVPTGMVEVSSQWQVMLDLPDEEHVH 190