Pairwise Alignments

Query, 534 a.a., ATP dependent DNA ligase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 534 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) LigC from Xanthomonas campestris pv. campestris strain 8004

 Score =  507 bits (1305), Expect = e-148
 Identities = 268/535 (50%), Positives = 341/535 (63%), Gaps = 9/535 (1%)

Query: 1   MKDFAALFTSLDQTTKITPKVAALAAYFRTAPEEDRLWTIALLSGRRPK----RTVTTTR 56
           +K FAAL+ +LD++T    K AAL AYFR AP  D  W + LL+G +      R   +  
Sbjct: 1   VKRFAALYRTLDRSTGTLDKRAALVAYFRAAPPLDAAWALYLLAGGKVASARMRIAASGE 60

Query: 57  LREWAAERAGIPLWLFEEAYPVVGDLAETIALVLPPPTRTSTR-SLTDWITT-IRGLAAR 114
           LREW AE AGI  WL  ++Y  VGDLAET+AL+L  P   +   SL +WI   +  +A +
Sbjct: 61  LREWIAEAAGIADWLVADSYDHVGDLAETLALLLDDPASEAVDVSLAEWIEQRLLPIANQ 120

Query: 115 DEPDRRAEILAAWDSLPETERFVFNKLITGGFRMGVSAKLMTRALSQATDIPEPELAHRL 174
           D   R+  I+ AW +L   ER VFNKL+TG  R+GVS +L+ +AL++ + +    +A R+
Sbjct: 121 DVAVRKHCIVQAWRTLAFDERLVFNKLLTGALRVGVSQRLVQQALAELSGVDIARIAQRM 180

Query: 175 MGDWTPETTSFQSLVLTRDPAADLSKPYPFYLAYGLEDPPDTLGPPADWQAEHKWDGIRG 234
           +G W P  T    L+       D  +PYPF+LA  LE   ++LG   DW  E KWDGIR 
Sbjct: 181 LGSWRPHATYVADLLTHEALPGDRQQPYPFFLASPLEADVESLGAIDDWLLEWKWDGIRL 240

Query: 235 QLILRGGQHFVWSRGEELMTDRFPELAALRDFLPDGTVLDGELLAWDYNGAGDAPLPFNA 294
           QL+ R G+  +WSRGEE +  RFPE+      LPDGTV+DGELLAW        P+PF A
Sbjct: 241 QLLRRAGEAALWSRGEERLDGRFPEIEQAAMGLPDGTVIDGELLAWQPEQL--LPMPFTA 298

Query: 295 LQKRIGRKTVPKKLLSEAPVILRAYDLLEDGGTDLRDRPLSERRARLEALAAALPDTLPL 354
           LQ RI R     K L+ AP  + AYDLLE  G DLR+RPL  RRA LE + A L D   +
Sbjct: 299 LQTRIQRLKPGPKTLAAAPARVVAYDLLELDGEDLRERPLHARRALLERVLATLADPRII 358

Query: 355 RLSPTLTFDSWDALAQIRAKSREMGAEGIMLKRRASPYLAGRKKGDWWKWKVDPLTIDAV 414
             SP +    W A AQ+R  +R  G EG+MLKR  SPY +GR++GDWWKWK+DPLTIDAV
Sbjct: 359 A-SPLVHSTDWQAAAQVRLDARARGVEGLMLKRARSPYQSGRRRGDWWKWKIDPLTIDAV 417

Query: 415 MIYAQAGHGRRANLFTDYTFAVWDGNELVPFTKAYSGLTDAEFRQITAWVRKNTLERFGP 474
           ++YAQAGHGRR+ L+TDYTF +W    LVP  KAYSGL D E  Q+  W+R NT ERFGP
Sbjct: 418 LLYAQAGHGRRSTLYTDYTFGLWHDGALVPIAKAYSGLDDTEILQLDRWIRANTTERFGP 477

Query: 475 VRRVTPEHVFEIAFEGIQASPRHKSGVALRFPRMLRWRKDKPLQEANTLEDLKGM 529
           VR VTP HVFE+ FEG+  S RHKSG+A+RFPR+LRWR DKP  EA+ L  L+ +
Sbjct: 478 VRAVTPHHVFELGFEGVNRSTRHKSGIAVRFPRILRWRHDKPFAEADHLSSLQAL 532